Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1745 ATGAAAAAAAAGAAAGAGAAGAAGAAGAAGAAGAAGGAGAAGAGGAAGAAAAGGACAGCTTCTGTTGTTTGTCTTAAAAGCTTTGGAAATGGCAGCCACAAGGCTCTTCTTCCATGGAGTTTGTGTAGCACACCAAAAATATCTTTGACATTAAGCGAGCTCCTGTTGATTCAGTCTGTTTCTGTAATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGAATCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCAACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCTCCTTTCCATGACAATGGACCAAATGCATCTGCCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1638 41.64 MKKKKEKKKKKKEKRKKRTASVVCLKSFGNGSHKALLPWSLCSTPKISLTLSELLLIQSVSVMESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRESSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASATNMFKENSNQYPLSVGASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27944769 27952970 + CcPI632755_06g017450.1 Cco06g1745 182345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1745 545 Gene3D - 228 298 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1745 545 Pfam SBP domain 237 310 IPR004333 GO:0003677(InterPro)
Cco06g1745 545 ProSiteProfiles Zinc finger SBP-type profile. 234 311 IPR004333 GO:0003677(InterPro)
Cco06g1745 545 FunFam Squamosa promoter-binding-like protein 14 228 298 - -
Cco06g1745 545 SUPERFAMILY SBT domain 235 314 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1745 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 171 491 IPR044817 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1745 Cco-Chr6:27944769 Cco06g1998 Cco-Chr6:30088734 1.10E-36 dispersed
Cco01g1751 Cco-Chr1:30269990 Cco06g1745 Cco-Chr6:27944769 1.00E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59540 PF03110 SBP 1.10E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1745 - - - 0.0