Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1745 ATGAAAAAAAAGAAAGAGAAGAAGAAGAAGAAGAAGGAGAAGAGGAAGAAAAGGACAGCTTCTGTTGTTTGTCTTAAAAGCTTTGGAAATGGCAGCCACAAGGCTCTTCTTCCATGGAGTTTGTGTAGCACACCAAAAATATCTTTGACATTAAGCGAGCTCCTGTTGATTCAGTCTGTTTCTGTAATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGAATCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCAACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCTCCTTTCCATGACAATGGACCAAATGCATCTGCCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1638 41.64 MKKKKEKKKKKKEKRKKRTASVVCLKSFGNGSHKALLPWSLCSTPKISLTLSELLLIQSVSVMESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRESSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASATNMFKENSNQYPLSVGASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27944769 27952970 + CcPI632755_06g017450.1 Cco06g1745 182345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1745 545 Gene3D - 228 298 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1745 545 Pfam SBP domain 237 310 IPR004333 GO:0003677(InterPro)
Cco06g1745 545 ProSiteProfiles Zinc finger SBP-type profile. 234 311 IPR004333 GO:0003677(InterPro)
Cco06g1745 545 FunFam Squamosa promoter-binding-like protein 14 228 298 - -
Cco06g1745 545 SUPERFAMILY SBT domain 235 314 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1745 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 171 491 IPR044817 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1745 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1745 Cco-Chr6:27944769 Cco06g1998 Cco-Chr6:30088734 1.10E-36 dispersed
Cco01g1751 Cco-Chr1:30269990 Cco06g1745 Cco-Chr6:27944769 1.00E-148 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1169 . 181 1009 SBP-box Gene Family AT2G47070 55.4 3.6e-240 828.2
Cco10g1169 . 25 1009 SBP-box Gene Family AT3G60030 54.3 8.0e-274 940.3
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.9e-39 158.7
Cco06g1745 . 181 354 SBP-box Gene Family AT1G69170 54.0 1.1e-41 167.9
Cco10g1169 . 181 1009 SBP-box Gene Family AT2G47070 55.4 3.6e-240 828.2
Cco06g1745 . 181 354 SBP-box Gene Family AT1G69170 54.0 1.1e-41 167.9
Cco10g1169 . 25 1009 SBP-box Gene Family AT3G60030 54.3 8.0e-274 940.3
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.9e-39 158.7
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50670 55.8 5.9e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59540 PF03110 SBP 1.10E-31 No_clan Cco TF