Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1748 ATGAGGTCTCGGCGTTTCGCTTCCACCGGATCCGTCGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCACTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATATAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCCGGCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTTAGACTTCCTAAAAACTTCACGCTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTGGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCAACAATGCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCACCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTATAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAAGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTCATGACCATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 43.93 MRSRRFASTGSVADLTGLAVLLIFLLSSFTFTSTEAYDALDPNGNITIKWDIMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPGNAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGNNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLMTILISLALLLNFAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27966798 27969539 - CcPI632755_06g017480.1 Cco06g1748 182348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1748 455 PIRSF COBRA 9 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cco06g1748 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cco06g1748 455 PANTHER PROTEIN COBRA 24 447 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1748 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1112 Cco-Chr5:10074567 Cco06g1748 Cco-Chr6:27966798 3.90E-138 dispersed
Cco06g1748 Cco-Chr6:27966798 Cco07g1675 Cco-Chr7:30751789 2.10E-219 dispersed
Cco06g1747 Cco-Chr6:27963746 Cco06g1748 Cco-Chr6:27966798 3.50E-188 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1748 . 48 447 COBRA Gene Family AT5G60920 80.0 2.3e-209 724.9
Cco07g1675 . 44 450 COBRA Gene Family AT5G60920 75.2 5.8e-200 693.7
Cco06g1747 . 55 450 COBRA Gene Family AT5G60920 69.5 6.6e-180 627.1
Cco07g1676 . 31 426 COBRA Gene Family AT5G60920 68.0 1.9e-179 625.5
Cco01g1753 . 201 591 COBRA Gene Family AT5G60920 58.4 1.6e-146 516.2
Cco05g1112 . 31 430 COBRA Gene Family AT5G60920 54.6 2.8e-130 462.2
Cco06g1748 . 22 451 COBRA Gene Family AT3G02210 74.4 6.6e-205 710.3
Cco07g1675 . 19 448 COBRA Gene Family AT3G02210 74.7 5.6e-204 707.2
Cco07g1676 . 5 429 COBRA Gene Family AT3G02210 66.4 2.8e-179 625.2
Cco06g1747 . 27 451 COBRA Gene Family AT3G02210 66.3 1.4e-178 622.9
Cco01g1753 . 187 587 COBRA Gene Family AT3G02210 58.1 5.6e-148 521.2
Cco05g1112 . 1 428 COBRA Gene Family AT3G02210 54.4 7.4e-140 494.2
Cco06g1748 . 21 446 COBRA Gene Family AT3G29810 75.5 1.0e-202 703.0
Cco07g1675 . 29 448 COBRA Gene Family AT3G29810 72.6 6.0e-195 677.2
Cco07g1676 . 14 428 COBRA Gene Family AT3G29810 66.0 2.8e-176 615.1
Cco06g1747 . 38 436 COBRA Gene Family AT3G29810 67.2 1.2e-174 609.8
Cco01g1753 . 187 591 COBRA Gene Family AT3G29810 56.8 9.7e-145 510.4
Cco05g1112 . 13 430 COBRA Gene Family AT3G29810 55.1 3.6e-139 491.9
Cco02g0474 . 641 1049 COBRA Gene Family AT3G29810 50.1 2.2e-120 429.5
Cco06g1747 . 32 363 COBRA Gene Family AT5G15630 83.1 4.0e-178 620.9
Cco07g1676 . 9 339 COBRA Gene Family AT5G15630 82.2 2.2e-176 615.1
Cco06g1748 . 31 361 COBRA Gene Family AT5G15630 73.5 1.2e-150 529.6
Cco07g1675 . 29 358 COBRA Gene Family AT5G15630 68.2 1.7e-144 509.2
Cco01g1753 . 184 498 COBRA Gene Family AT5G15630 60.2 4.1e-127 451.4
Cco05g1112 . 19 341 COBRA Gene Family AT5G15630 50.6 3.4e-97 352.1
Cco06g1748 . 19 224 COBRA Gene Family AT5G60950 57.0 5.1e-64 241.1
Cco07g1675 . 27 220 COBRA Gene Family AT5G60950 59.5 1.1e-63 240.0
Cco06g1747 . 51 231 COBRA Gene Family AT5G60950 58.6 1.9e-58 222.6
Cco07g1676 . 27 207 COBRA Gene Family AT5G60950 57.5 1.9e-58 222.6
Cco05g1112 . 12 413 COBRA Gene Family AT1G09790 60.5 1.4e-151 533.1
Cco07g1675 . 25 428 COBRA Gene Family AT1G09790 54.3 1.2e-134 476.9
Cco06g1747 . 41 434 COBRA Gene Family AT1G09790 53.7 3.9e-133 471.9
Cco06g1748 . 32 432 COBRA Gene Family AT1G09790 53.3 5.6e-132 468.0
Cco07g1676 . 3 410 COBRA Gene Family AT1G09790 51.3 3.4e-129 458.8
Cco05g0753 . 34 643 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Cco10g0528 . 57 665 COBRA Gene Family AT4G16120 54.3 6.6e-206 714.1
Cco05g1672 . 1 453 COBRA Gene Family AT4G16120 55.9 2.0e-162 569.7
Cco05g0753 . 11 649 COBRA Gene Family AT3G16860 63.1 3.0e-243 838.2
Cco10g0528 . 57 654 COBRA Gene Family AT3G16860 52.8 1.2e-194 676.8
Cco05g1672 . 1 454 COBRA Gene Family AT3G16860 53.5 2.5e-149 526.2
Cco05g0753 . 7 639 COBRA Gene Family AT5G49270 61.0 7.1e-240 827.0
Cco10g0528 . 57 652 COBRA Gene Family AT5G49270 52.3 3.0e-198 688.7
Cco05g1672 . 4 474 COBRA Gene Family AT5G49270 52.1 1.5e-152 537.0
Cco10g0528 . 56 672 COBRA Gene Family AT3G20580 63.1 2.6e-250 861.7
Cco05g0753 . 27 627 COBRA Gene Family AT3G20580 54.9 3.0e-206 715.3
Cco05g1672 . 1 469 COBRA Gene Family AT3G20580 64.8 9.8e-197 683.7
Cco10g0528 . 57 673 COBRA Gene Family AT4G27110 63.6 6.2e-244 840.5
Cco05g0753 . 24 645 COBRA Gene Family AT4G27110 51.9 2.3e-198 689.1
Cco05g1672 . 1 441 COBRA Gene Family AT4G27110 66.4 7.7e-186 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73