Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1759 ATGATAACTTTAAAGCCATGTTTGCATCGCGAGGGAGGTGAAGAAGAACAAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCAGCCTTCCGGGTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGTCAAGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGTGGTGGCGGTGGCTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGCTATGGTGGCGGGGGCTATGGTGGCGGCGGGACTGGAGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCGAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGTCAGTGCCAACCGTGGAAGTGTTGCAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGTGGTTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGTGGCGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGAAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA 1008 50.1 MITLKPCLHREGGEEEQGCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYANDRSRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGTGGYGGGGAGGYGGGGSGGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFVSANRGSVAGGGGFGGNDAGGYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGKQFGSNETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28069321 28074755 + CcPI632755_06g017590.1 Cco06g1759 182359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1759 335 SUPERFAMILY RNA-binding domain, RBD 32 157 IPR035979 GO:0003676(InterPro)
Cco06g1759 335 MobiDBLite consensus disorder prediction 289 335 - -
Cco06g1759 335 CDD RRM2_NsCP33_like 65 140 IPR048289 -
Cco06g1759 335 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 50 144 IPR052462 GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cco06g1759 335 Pfam RNA recognition motif 66 136 IPR000504 GO:0003723(InterPro)
Cco06g1759 335 Gene3D - 56 180 IPR012677 -
Cco06g1759 335 MobiDBLite consensus disorder prediction 289 311 - -
Cco06g1759 335 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 33 166 - -
Cco06g1759 335 SMART rrm1_1 65 138 IPR000504 GO:0003723(InterPro)
Cco06g1759 335 PRINTS Eggshell protein signature 60 76 - -
Cco06g1759 335 PRINTS Eggshell protein signature 161 176 - -
Cco06g1759 335 PRINTS Eggshell protein signature 187 197 - -
Cco06g1759 335 PRINTS Eggshell protein signature 235 253 - -
Cco06g1759 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1759 K12741 - - csv:101218446 221.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1099 Cco-Chr2:15442386 Cco06g1759 Cco-Chr6:28069321 1.50E-19 dispersed
Cco06g1759 Cco-Chr6:28069321 Cco10g2010 Cco-Chr10:33597959 6.30E-19 dispersed
Cco01g1841 Cco-Chr1:30990067 Cco06g1759 Cco-Chr6:28069321 9.40E-14 transposed
Cco03g0100 Cco-Chr3:1047961 Cco06g1759 Cco-Chr6:28069321 7.70E-07 transposed
Cco04g1036 Cco-Chr4:25908897 Cco06g1759 Cco-Chr6:28069321 3.00E-18 transposed
Cco05g1706 Cco-Chr5:25097498 Cco06g1759 Cco-Chr6:28069321 2.60E-13 transposed
Cco07g1761 Cco-Chr7:31763966 Cco06g1759 Cco-Chr6:28069321 5.00E-10 transposed
Cco08g1021 Cco-Chr8:22056024 Cco06g1759 Cco-Chr6:28069321 4.50E-14 transposed
Cco10g1863 Cco-Chr10:32241265 Cco06g1759 Cco-Chr6:28069321 1.60E-20 transposed
Cco11g0454 Cco-Chr11:4755332 Cco06g1759 Cco-Chr6:28069321 2.20E-20 transposed
Cco01g1769 Cco-Chr1:30413566 Cco06g1759 Cco-Chr6:28069321 9.00E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92