Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1768 | ATGGACGAAATTGCCCTCATCGTCGCCACCGTAGTAACCTTGGCCGCCGCCATCCTCCTCTACCGTGCTTTCTTCCTCCGCCGCAGATTCCGCCTCCCGCCTGGTCGAAAACCATGGCCGATCGTAGGAAACATGCCGCAAATCGGCGGAGCGCCTCTCCATTCCCTCCTCGCCACCATGGCCGGCGAGTACGGACCTCTGATGTACCTCCGATTAGGCTCCGTTGACATGGTCGTGGCGGCGTCGGCGGCAGTAGCGGAGCAACTCTTGAAGATACACGATACTAATTTCCTTAGCCGCCCGCCGAACGCCGGCGCAAAATACATTGCTTATAATTATCAGGATATGGTTTTTGCGCCGTACGGTCCACGGTGGCGATTACTCCGGAAAATCAGCGCCGTCCATCTCTTCTCCTCAAAAGCCCTAGATGATCATCGCCGCATACGCGAGGAGGAGATAGCGATGCTAGTACAGGCTCTTGCAAGGTCCGGCGAAGCTCCGGCGACCTTGGGGAGCTTGCTCACCGTGTGCACTGCGAATGCGCTCGGACGGACAATGATCGGCCGACGGGTTTTCGGCGATGGCAGCGGCGGCAACGATCCAGAGGCGAACCGATTTAAGGAAATGGTCGAGCAAGTGATGGTGCTGGCCGGAAAGTTCAACCCCGGCGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGTTGTGGCAAGTGAGATGAAGAAGGTCCACAAATGGTTCGACGATTTTTTGACCAAGATCTTGGAGGAGCACCGGAATTTATTGGCCGCAGGCCGTGGCGGCGGCGGCGACCACCACCAAGACTTGTTGAGTACTCTTCTGTCGTCAAAGGATGAAGCTGAGGATGGGAATGAGAAACTTAATGACACTGAGATCAAGGCTTTGTTGTTGAATATGTTTACCGCTGGAACCGACACTTCAGCAAGCACAGTGGAATGGGCCTTGACAGAGCTGATCAGACATCCCAAAATGATGGCCCAGGCCCAACAAGAATTGGACTCCGTAGTGGGCCGTGATCGGGCAGTTTCCGATCTGGACTTGCCGCAACTGCCCTTTCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTACCACATCCCTAAAGGCTCCACTCTCTTGGTGGATGTATGGGCCATTGGTCGTGACCCAAAAGAATGGGCCGACCCACTTGAATTCAGGCCCAATAGGTTCCTCCCAGGCGGAGAGAAGGCCCACGCCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTTGGAGCTGGGCGGAGGATCTGCGTGGGTATGAGTATGGGCCTGAGGATGGTCCAGATGTTAACTGCCACGTTGGCCCATTCCTTTGATTGGGCCTTGCCTAATGGGCTTTGGCCAGATGAGTTAAACATGGACGAGGCCTATGGGCTGACTCTGCGTCGGGCCCAACCCTTGGTTGTGCATCCACGGCCGAGATTATTACCTGGGGTTTATCAAAAATTGCCTTAA | 1563 | 55.79 | MDEIALIVATVVTLAAAILLYRAFFLRRRFRLPPGRKPWPIVGNMPQIGGAPLHSLLATMAGEYGPLMYLRLGSVDMVVAASAAVAEQLLKIHDTNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDHRRIREEEIAMLVQALARSGEAPATLGSLLTVCTANALGRTMIGRRVFGDGSGGNDPEANRFKEMVEQVMVLAGKFNPGDFFPSLEWLDLLVVASEMKKVHKWFDDFLTKILEEHRNLLAAGRGGGGDHHQDLLSTLLSSKDEAEDGNEKLNDTEIKALLLNMFTAGTDTSASTVEWALTELIRHPKMMAQAQQELDSVVGRDRAVSDLDLPQLPFLQAVVKETFRLHPPTPLSLPRMAAESCEINGYHIPKGSTLLVDVWAIGRDPKEWADPLEFRPNRFLPGGEKAHADVKGNDFEVIPFGAGRRICVGMSMGLRMVQMLTATLAHSFDWALPNGLWPDELNMDEAYGLTLRRAQPLVVHPRPRLLPGVYQKLP | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 28129559 | 28134134 | - | CcPI632755_06g017680.1 | Cco06g1768 | 182368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 362 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 85 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 299 | 316 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 319 | 345 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | E-class P450 group I signature | 403 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | Pfam | Cytochrome P450 | 33 | 481 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PANTHER | CYTOCHROME P450 98A9 | 8 | 516 | - | - | |
| Cco06g1768 | 520 | Gene3D | Cytochrome P450 | 26 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | SUPERFAMILY | Cytochrome P450 | 33 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | FunFam | Cytochrome P450 82C4 | 26 | 507 | - | - | |
| Cco06g1768 | 520 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco06g1768 | 520 | PRINTS | P450 superfamily signature | 363 | 374 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | P450 superfamily signature | 310 | 327 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1768 | 520 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0098 | Cco-Chr5:839160 | Cco06g1768 | Cco-Chr6:28129559 | 6.60E-100 | dispersed | |
| Cco06g1768 | Cco-Chr6:28129559 | Cco07g1492 | Cco-Chr7:29020046 | 1.70E-108 | dispersed | |
| Cco06g1768 | Cco-Chr6:28129559 | Cco05g2865 | Cco-Chr5:36271161 | 9.20E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1768 | K05280 | - | csv:101207160 | 843.958 |