Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1768 ATGGACGAAATTGCCCTCATCGTCGCCACCGTAGTAACCTTGGCCGCCGCCATCCTCCTCTACCGTGCTTTCTTCCTCCGCCGCAGATTCCGCCTCCCGCCTGGTCGAAAACCATGGCCGATCGTAGGAAACATGCCGCAAATCGGCGGAGCGCCTCTCCATTCCCTCCTCGCCACCATGGCCGGCGAGTACGGACCTCTGATGTACCTCCGATTAGGCTCCGTTGACATGGTCGTGGCGGCGTCGGCGGCAGTAGCGGAGCAACTCTTGAAGATACACGATACTAATTTCCTTAGCCGCCCGCCGAACGCCGGCGCAAAATACATTGCTTATAATTATCAGGATATGGTTTTTGCGCCGTACGGTCCACGGTGGCGATTACTCCGGAAAATCAGCGCCGTCCATCTCTTCTCCTCAAAAGCCCTAGATGATCATCGCCGCATACGCGAGGAGGAGATAGCGATGCTAGTACAGGCTCTTGCAAGGTCCGGCGAAGCTCCGGCGACCTTGGGGAGCTTGCTCACCGTGTGCACTGCGAATGCGCTCGGACGGACAATGATCGGCCGACGGGTTTTCGGCGATGGCAGCGGCGGCAACGATCCAGAGGCGAACCGATTTAAGGAAATGGTCGAGCAAGTGATGGTGCTGGCCGGAAAGTTCAACCCCGGCGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGTTGTGGCAAGTGAGATGAAGAAGGTCCACAAATGGTTCGACGATTTTTTGACCAAGATCTTGGAGGAGCACCGGAATTTATTGGCCGCAGGCCGTGGCGGCGGCGGCGACCACCACCAAGACTTGTTGAGTACTCTTCTGTCGTCAAAGGATGAAGCTGAGGATGGGAATGAGAAACTTAATGACACTGAGATCAAGGCTTTGTTGTTGAATATGTTTACCGCTGGAACCGACACTTCAGCAAGCACAGTGGAATGGGCCTTGACAGAGCTGATCAGACATCCCAAAATGATGGCCCAGGCCCAACAAGAATTGGACTCCGTAGTGGGCCGTGATCGGGCAGTTTCCGATCTGGACTTGCCGCAACTGCCCTTTCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTACCACATCCCTAAAGGCTCCACTCTCTTGGTGGATGTATGGGCCATTGGTCGTGACCCAAAAGAATGGGCCGACCCACTTGAATTCAGGCCCAATAGGTTCCTCCCAGGCGGAGAGAAGGCCCACGCCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTTGGAGCTGGGCGGAGGATCTGCGTGGGTATGAGTATGGGCCTGAGGATGGTCCAGATGTTAACTGCCACGTTGGCCCATTCCTTTGATTGGGCCTTGCCTAATGGGCTTTGGCCAGATGAGTTAAACATGGACGAGGCCTATGGGCTGACTCTGCGTCGGGCCCAACCCTTGGTTGTGCATCCACGGCCGAGATTATTACCTGGGGTTTATCAAAAATTGCCTTAA 1563 55.79 MDEIALIVATVVTLAAAILLYRAFFLRRRFRLPPGRKPWPIVGNMPQIGGAPLHSLLATMAGEYGPLMYLRLGSVDMVVAASAAVAEQLLKIHDTNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDHRRIREEEIAMLVQALARSGEAPATLGSLLTVCTANALGRTMIGRRVFGDGSGGNDPEANRFKEMVEQVMVLAGKFNPGDFFPSLEWLDLLVVASEMKKVHKWFDDFLTKILEEHRNLLAAGRGGGGDHHQDLLSTLLSSKDEAEDGNEKLNDTEIKALLLNMFTAGTDTSASTVEWALTELIRHPKMMAQAQQELDSVVGRDRAVSDLDLPQLPFLQAVVKETFRLHPPTPLSLPRMAAESCEINGYHIPKGSTLLVDVWAIGRDPKEWADPLEFRPNRFLPGGEKAHADVKGNDFEVIPFGAGRRICVGMSMGLRMVQMLTATLAHSFDWALPNGLWPDELNMDEAYGLTLRRAQPLVVHPRPRLLPGVYQKLP 520
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 28129559 28134134 - CcPI632755_06g017680.1 Cco06g1768 182368
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1768 520 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 Pfam Cytochrome P450 33 481 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PANTHER CYTOCHROME P450 98A9 8 516 - -
Cco06g1768 520 Gene3D Cytochrome P450 26 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 SUPERFAMILY Cytochrome P450 33 510 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 FunFam Cytochrome P450 82C4 26 507 - -
Cco06g1768 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco06g1768 520 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1768 520 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0098 Cco-Chr5:839160 Cco06g1768 Cco-Chr6:28129559 6.60E-100 dispersed
Cco06g1768 Cco-Chr6:28129559 Cco07g1492 Cco-Chr7:29020046 1.70E-108 dispersed
Cco06g1768 Cco-Chr6:28129559 Cco05g2865 Cco-Chr5:36271161 9.20E-86 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1768 K05280 - csv:101207160 843.958