Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1769 ATGGCCAAATTGGCGCTGGAGACTTACGGCCACGACCTCGTCGACAAAGCAGAAAACCAAAAACTCGATCCCGTCTTCGGCCGCCACCAAGAAATTCGCCGTCTCCTCACCATTCTCTGCCGTAAAACCAAACGCAATCCCAAGCTAATCAGCGAGCCTGGCGTCGGAAAAACCGCCGTCGTCGAAGGACTCGCACAGAAAATCGCCGCCGGATATGTACCGAGCGAACTCTCCGGTGCAAGAATCGTTGAGCTGGACATGGGAGCCTTAATCGCAGGAACAGAATACAGAGGGCAATTCGAAGAGAGACTGAAAAACGTGATGAAGGAAGTGCAAGATTCGGAAGGGAAAGTGGTAGTGTTCATCGATGAAATTCATTTGGTGGTCCGAAATGGCCGAACCGCCGCCGACATTCTGAAACCGGCACTGGGGAGAGGGAATTTTCGGTGCATCGGAGCGACGACGTTGAAGGAATATAAAAGGTATATTGAGAAGGACGCGGCATTAGCGAGGAGATTTAAACAAGTTTATGTAAATGAGCCAAGCGTTGAAGATTCCATTAGCATTCTTAGAGTGTTGAAGGAGAGATATGAAAATCATCATGCTCTTAAAATTAAAGACACTGCTCTTGTTGCTGCTGCCAAACTGTCTCATCGCTACATCACAGGGCGACAACTCCCCGATAAAGCAATCGATCTAGTTGATGAAGCAAGTGCATGCTTGAGAGTTCAACTCGACACTCAACCTGAAGAAATTTTGGAACTCGAAAGTAAAAGGGCAAAGCTTGAAGTTGAAGTCAATGCACTTGAAAAAGAGGATGACAAAGCAAGCCAAGCTCGTCTTCCTCAAAAATTAGAGGAAGTAGAATTGAAAATTGATGAGGTTGAAAGGAGCATAAAAAAGCAAAGCTTTATAGTGAAGGACACGGTTGGACCGGAGGAAATAGCCGATGAGGTGAGCCGTTGGACTGGGGTTCCGGTTTTGAGGATGTTCGGGAAAGAGAAGGAGTGGGTTATGGGTTTGGCCGGGCGGCTGCAGAAAAGAGTCATAGGACAAAATGAAGCAGTTAATTCAATAGCTGAAGCAGTGATGAGGTTCAGAGCTGGGCTCGGAAGGCCGAACCAACCTAATGGTTCGTTTTTGTTTTTGGGCCCGTCTGGGGTTGGGAAAACAGAGCTAGCCAAGGCTCTGGCTCATGAGCTTTTTAATGACGAGAATCGTATGCTCATTGGAGCTCCACCTGGGTATATTGGATACTATGAAGGTGGGCAACTAACAGAGCCAGTGAGCCAGCGACCATATTGCGTAGTTCTTCTGGATGAAGTGGAAAAAGCCCACGTGGATGTTTTGAATATTCTTCTTCAAGTTTTAGATGACGGACGCCTGACCGACGGGCAAGGTTCCACAGTGGACTTCAGAAACACGGTTGTTATCATGACTTCCAATCTTGGAGCTGGGCACCTTCTTGCTGAAAAGTACTGCCCCAAGCATGTTGCGCGTGATAGGGTTCTCCGAAAGGTTAAAGAACATTTCAAGCCGGAATTTGTGAGCCGGCTGGACGAGATTTTGATTTTCCGGCCGCTTTCGAAAGATCAACAAAGAAGGATCACTAAATCAATGATGCAAGACGTTGCACGCCGTCTTTCAGAAAAAGGCATTGCAATGGCCGTCACAGAAGCCGCTCTCGACTTCGTTCTTCATCAATGCTTCGATCCGGTTTATGGCGCTAGGCCGATCAGGCGGTGGCTGGAGAAGAAAGTGGTGACGCAGCTTTCGAAGATGCTTATAAAAGAAGAGATCGGCGAGGAATCCACCGTGTACGTGGATGCCGGCGACGGCGGAAAAGATTTGGAGTATAAAGTTGAGAAAAATAATGGTTTGATTAATGGAATCAAAGATGGAAGATATGAGATATTAATTCAAATTCCATGTGTGGAGCAAAAATAA 1947 47.0 MAKLALETYGHDLVDKAENQKLDPVFGRHQEIRRLLTILCRKTKRNPKLISEPGVGKTAVVEGLAQKIAAGYVPSELSGARIVELDMGALIAGTEYRGQFEERLKNVMKEVQDSEGKVVVFIDEIHLVVRNGRTAADILKPALGRGNFRCIGATTLKEYKRYIEKDAALARRFKQVYVNEPSVEDSISILRVLKERYENHHALKIKDTALVAAAKLSHRYITGRQLPDKAIDLVDEASACLRVQLDTQPEEILELESKRAKLEVEVNALEKEDDKASQARLPQKLEEVELKIDEVERSIKKQSFIVKDTVGPEEIADEVSRWTGVPVLRMFGKEKEWVMGLAGRLQKRVIGQNEAVNSIAEAVMRFRAGLGRPNQPNGSFLFLGPSGVGKTELAKALAHELFNDENRMLIGAPPGYIGYYEGGQLTEPVSQRPYCVVLLDEVEKAHVDVLNILLQVLDDGRLTDGQGSTVDFRNTVVIMTSNLGAGHLLAEKYCPKHVARDRVLRKVKEHFKPEFVSRLDEILIFRPLSKDQQRRITKSMMQDVARRLSEKGIAMAVTEAALDFVLHQCFDPVYGARPIRRWLEKKVVTQLSKMLIKEEIGEESTVYVDAGDGGKDLEYKVEKNNGLINGIKDGRYEILIQIPCVEQK 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28139738 28145130 - CcPI632755_06g017690.1 Cco06g1769 182369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1769 648 SMART AAA_5 43 183 IPR003593 GO:0016887(InterPro)
Cco06g1769 648 SMART AAA_5 376 514 IPR003593 GO:0016887(InterPro)
Cco06g1769 648 Pfam AAA domain (Cdc48 subfamily) 376 522 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco06g1769 648 CDD AAA 26 176 - -
Cco06g1769 648 Pfam AAA lid domain 182 282 IPR041546 -
Cco06g1769 648 Gene3D - 183 303 IPR027417 -
Cco06g1769 648 Gene3D - 528 627 - -
Cco06g1769 648 Pfam C-terminal, D2-small domain, of ClpB protein 528 608 IPR019489 -
Cco06g1769 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 616 IPR027417 -
Cco06g1769 648 Coils Coil 252 279 - -
Cco06g1769 648 Gene3D - 306 527 IPR027417 -
Cco06g1769 648 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 380 398 IPR001270 GO:0005524(InterPro)
Cco06g1769 648 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 471 485 IPR001270 GO:0005524(InterPro)
Cco06g1769 648 PANTHER ATP-DEPENDENT CLP PROTEASE 5 624 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Cco06g1769 648 CDD RecA-like_ClpB_Hsp104-like 344 525 - -
Cco06g1769 648 Coils Coil 97 117 - -
Cco06g1769 648 Pfam ATPase family associated with various cellular activities (AAA) 49 156 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco06g1769 648 Gene3D - 2 182 IPR027417 -
Cco06g1769 648 SMART ClpB_D2_small_2 528 617 IPR019489 -
Cco06g1769 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 321 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1769 K03696 - - csv:101217495 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1769 Cco-Chr6:28139738 Cco06g2034 Cco-Chr6:30302817 1.10E-152 dispersed
Cco01g1778 Cco-Chr1:30508468 Cco06g1769 Cco-Chr6:28139738 1.90E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63