Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1795 CCTGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCACTAGGTGCTAAAGGAGCAAATGCTCCACCTGACCCGAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGCTCTACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACGAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAAAGATACGGCGAGCCTCAAATTGCTCCAGAGTTTGATGTGTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGATGAGTCAGTTTTAGATGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGGGATATGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACATTGAATCAAGGAACAGCAAGGGGTTCTGCAGTTGGCTTCAAGCTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCACTATCTTTGCAAGGTCCTCGCTTCAAAGACACCAGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTCGAGCCAGCAACCAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGACGGTCCAGTCTCTGAAGTTTTTCGCAAGACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGACATCTGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCCCTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTCGTGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGAGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 1359 44.0 PAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKEFIAIAETEVTSVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAEKEAEMENAKGISLTKKSVK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28351065 28366477 + CcPI632755_06g017950.1 Cco06g1795 182395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1795 452 MobiDBLite consensus disorder prediction 427 442 - -
Cco06g1795 452 SMART it6_source 40 450 IPR015425 -
Cco06g1795 452 MobiDBLite consensus disorder prediction 427 452 - -
Cco06g1795 452 FunFam Formin-like protein 42 426 - -
Cco06g1795 452 Coils Coil 415 444 - -
Cco06g1795 452 Pfam Formin Homology 2 Domain 47 414 IPR015425 -
Cco06g1795 452 SUPERFAMILY Formin homology 2 domain (FH2 domain) 3 434 - -
Cco06g1795 452 Coils Coil 321 341 - -
Cco06g1795 452 MobiDBLite consensus disorder prediction 1 52 - -
Cco06g1795 452 Gene3D Formin, FH2 domain 39 426 IPR042201 -
Cco06g1795 452 MobiDBLite consensus disorder prediction 1 22 - -
Cco06g1795 452 ProSiteProfiles Formin homology-2 (FH2) domain profile. 42 440 IPR015425 -
Cco06g1795 452 PANTHER FORMIN-J 2 439 IPR051144 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1795 K28090 - - csv:116401642 781.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1867 Cco-Chr5:27576127 Cco06g1795 Cco-Chr6:28351065 2.00E-154 dispersed
Cco06g1795 Cco-Chr6:28351065 Cco07g0234 Cco-Chr7:2398977 4.60E-142 dispersed
Cco01g1794 Cco-Chr1:30651277 Cco06g1795 Cco-Chr6:28351065 1.20E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco09g1035 . 88 392 Protein tyrosine phosphatase (PTP) family AT1G71860 68.0 6.2e-123 437.6
Cco06g2033 . 170 1067 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1099.3
Cco06g0595 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-42 169.9
Cco09g2285 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cco05g2408 . 139 383 Protein tyrosine phosphatase (PTP) family AT3G52180 73.9 3.3e-109 391.7
Cco07g0514 . 10 269 Protein tyrosine phosphatase (PTP) family AT3G10940 66.5 5.7e-98 354.4
Cco10g1406 . 143 582 Protein tyrosine phosphatase (PTP) family AT3G01510 72.3 5.9e-198 687.2
Cco02g1936 . 96 297 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 1.5e-73 273.1
Cco09g1122 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cco03g1073 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.3e-55 210.7
Cco10g0247 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.5 6.6e-101 364.4
Cco11g0221 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cco11g0221 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.7e-45 179.5
Cco10g0247 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cco02g1936 . 130 298 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.9e-76 282.3
Cco09g1122 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 2.1e-70 262.3
Cco03g1073 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cco03g1073 . 7 195 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-77 284.6
Cco02g1936 . 121 293 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cco07g0302 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco02g0686 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.5 2.0e-220 762.3
Cco04g1461 . 75 650 Protein tyrosine phosphatase (PTP) family AT3G19420 60.9 1.2e-198 689.9
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco02g2353 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 4.0e-69 258.5
Cco10g0185 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.0 9.2e-110 393.7
Cco04g0913 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.0e-286 981.1
Cco04g0913 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 4.4e-258 887.5
Cco04g0913 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82