Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1795 CCTGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCACTAGGTGCTAAAGGAGCAAATGCTCCACCTGACCCGAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGCTCTACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACGAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAAAGATACGGCGAGCCTCAAATTGCTCCAGAGTTTGATGTGTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGATGAGTCAGTTTTAGATGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGGGATATGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACATTGAATCAAGGAACAGCAAGGGGTTCTGCAGTTGGCTTCAAGCTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCACTATCTTTGCAAGGTCCTCGCTTCAAAGACACCAGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTCGAGCCAGCAACCAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGACGGTCCAGTCTCTGAAGTTTTTCGCAAGACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGACATCTGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCCCTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTCGTGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGAGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 1359 44.0 PAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKEFIAIAETEVTSVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAEKEAEMENAKGISLTKKSVK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28351065 28366477 + CcPI632755_06g017950.1 Cco06g1795 182395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1795 452 MobiDBLite consensus disorder prediction 427 442 - -
Cco06g1795 452 SMART it6_source 40 450 IPR015425 -
Cco06g1795 452 MobiDBLite consensus disorder prediction 427 452 - -
Cco06g1795 452 FunFam Formin-like protein 42 426 - -
Cco06g1795 452 Coils Coil 415 444 - -
Cco06g1795 452 Pfam Formin Homology 2 Domain 47 414 IPR015425 -
Cco06g1795 452 SUPERFAMILY Formin homology 2 domain (FH2 domain) 3 434 - -
Cco06g1795 452 Coils Coil 321 341 - -
Cco06g1795 452 MobiDBLite consensus disorder prediction 1 52 - -
Cco06g1795 452 Gene3D Formin, FH2 domain 39 426 IPR042201 -
Cco06g1795 452 MobiDBLite consensus disorder prediction 1 22 - -
Cco06g1795 452 ProSiteProfiles Formin homology-2 (FH2) domain profile. 42 440 IPR015425 -
Cco06g1795 452 PANTHER FORMIN-J 2 439 IPR051144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1867 Cco-Chr5:27576127 Cco06g1795 Cco-Chr6:28351065 2.00E-154 dispersed
Cco06g1795 Cco-Chr6:28351065 Cco07g0234 Cco-Chr7:2398977 4.60E-142 dispersed
Cco01g1794 Cco-Chr1:30651277 Cco06g1795 Cco-Chr6:28351065 1.20E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1795 K28090 - csv:116401642 781.556