Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1798 ATGGGAGGAGAATTTTCTAGGGCTCCAAACCCTCGAATTCCTTTCTCCTCCCTTCTCCTCCTCCTCCTCTCTCTCTGCCTCTCCGCCGCTCTCTCCGCCGCCCAAACCCCCTCATTCCGTTCCTTCTCCCCTCGCGACGCTTATTTGATCAACTGCGGCTCCCCGGCCCAAACCCGTCTCGACGACGGCCGGATTTTCAAATCCGATCGCGAATCCACTTCTCTCCTTTCCACCGAAGAAGACGTTCAGATTTCCGTCGATTCCATTCCCTCAAACGCCGTTGTTTCGCCTCTCTCTTCTTGGTCATTACCTCTATTTCGCTCCGCTAGAATTTTCCCCGACGATTCCACCTATACTTTCTTCATTTCTCAGCCCGGCCGCCATTGGATCCGCCTCTACTTTTACCCTCTTCCTCACCCTAATTACAATCTCTCCGATTCCGTTTTCACCGTCACCACCGATACCTTCGTCCTCCTCCATGATTTCTCAATCAAACCCAATCCAAAAATCGTCTTCAAGGAATACCTAATCAACATTACCACCGATCGATTCTCCCTCCAGTTCAAACCCAAGAAGAATTCCTTCGCCTTCGTCAATGCCATTGAAATCGTCTCCGCTCCAGATCCTCTGTTTTCCGATTCCGCCAACTCTGTTTTTCCGGTGGGATTTTTCAACGGATTGTCGAACATTGCTCTGCAAATTTGCTACCGTGTTAATGTGGGTGGCCCTGAACTTGTTCCTAAAAACGATACGCTGTCAAGAACATGGGAAACGGATTATGCTTACAACAAATTTCCACAGGGTTCTAAAAATGTTTCTGTGGCTTTGAACTCCATTAGATACCCTGGAGATGAAGTGACTCCATTAATTGCTCCTAATTGGGTTTATGCAACTGCAGAGGATCTCCAAGATCCTGAAACGATTCAAGTAAATTTCAATATGAGTTGGAGTTTCAATGTGGAACCGAGTTACTCGTATTTGATCAGACTCCATTTCTGTGACATTGTGAGCAAAGTCCTCAACAGTTTGTACTTCAATGTCTACATCAATGGGATGATGGGTATTGCAGATCTTGATCTTTCTCAACTCACTGGTGATCTTTCCACTCCATACTATAGAGACCTTGTTCTCAATGCCTCTGACATCAAGAACAACACCATCATGATTCAGGTTGGTCCATCAAATTTGGATTCAGGGCTTCAAGATGCTATTCTAAATGGAGTGGAAATCATGAAGATGAGTAACGATGCACAAAGCTTGGATGGTTTGTTTTCAGTGGATGGGACATACATGGGAGGCTCAAGATTTAGCACAATGAAGATTGTAGCTGCTGTAGCACTTGGAATGGCAGCCATTGCCATTGTATTTGTTGGAGTAATGTTCTTGAGATGGCAAAAAAGGCCTCAGGGATGGGAGAAGAGAAACAGTTTCTCTTCATGGCTTCTTCCTTTGAATTCAACTCACACTGCCAGTTTCTTCTCTTCAAAAAGCAGCTCCAGAAGATCATCAACCGTTTTTAGCTCTCGAAGGAGCAGGACTGGCCTCTCAGCCATTTACTCCAATGTCGGTCTTGGCCGTTTCTTCTCCCTCAACGAGTTACAGGCTGCTACCCAGAACTTCGAGGAGAAAGCAGTGATCGGCGTTGGTGGATTCGGCAAAGTCTACGTCGGAGCATTAGAAGATGGAACCAAAGTCGCGATTAAACGTGGAAACCCTAGTTCTGATCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTGTCTAAACTCCGCCATCGCCATCTCGTTTCTCTAATCGGTTACTGCGACGAGCAATCCGAGATGATTCTGGTTTACGAGTACATGGCCAATGGCCCATTTCGCGACCACTTGTATGGCTCTAATCTCCCTCCTTTGTCTTGGAAACAGAGGCTCGAAATCTGTATCGGCGCTGCCCGTGGCCTTCACTATCTCCACACTGGTGCGGCTCAGGGCATAATCCACCGTGATGTCAAGACCACTAACATTCTTCTTGATGAAAATTTTGTTGCCAAAGTTGCTGATTTTGGGCTTTCCAAAGCTGCGCCATCTTTGGAACAGACCCATGTGAGCACTGCAGTCAAGGGAAGTTTTGGTTACCTTGATCCTGAGTACTTCAGAAGACAGCAACTCACTGAGAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGTGCAAGACAAGTCATCAATCCCACATTGCCGCGTGAGCAGGTAAATTTGGCGGAGTGGGCAATGCAAAATTACAGAAAAGGAAAGCTAGAGAAGATAATTGATCCTCAAATTAGCAGCTCAATTGTAGAGGGGTCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGTTGATAGACCAAGCATGGGAGATGTGCTATGGAACTTAGAATACGCTTTGCAGCTACAAGAGGCTGTATCAGAGCTCGAGGACCCTGAGGAAGACAAATGCGAAGGCCTTGTGGCTTTGGACAAACCAAATGACAATGAACCAAAAGGAGGTACAAGTGCTTCTGTAAGTGATGATATTTCTGAAGTTTCAGTTAGTGCTCCTTTGTTTTCAGAAGTTCAAAATTTTCAGGGAAGATAA 2631 45.72 MGGEFSRAPNPRIPFSSLLLLLLSLCLSAALSAAQTPSFRSFSPRDAYLINCGSPAQTRLDDGRIFKSDRESTSLLSTEEDVQISVDSIPSNAVVSPLSSWSLPLFRSARIFPDDSTYTFFISQPGRHWIRLYFYPLPHPNYNLSDSVFTVTTDTFVLLHDFSIKPNPKIVFKEYLINITTDRFSLQFKPKKNSFAFVNAIEIVSAPDPLFSDSANSVFPVGFFNGLSNIALQICYRVNVGGPELVPKNDTLSRTWETDYAYNKFPQGSKNVSVALNSIRYPGDEVTPLIAPNWVYATAEDLQDPETIQVNFNMSWSFNVEPSYSYLIRLHFCDIVSKVLNSLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNTIMIQVGPSNLDSGLQDAILNGVEIMKMSNDAQSLDGLFSVDGTYMGGSRFSTMKIVAAVALGMAAIAIVFVGVMFLRWQKRPQGWEKRNSFSSWLLPLNSTHTASFFSSKSSSRRSSTVFSSRRSRTGLSAIYSNVGLGRFFSLNELQAATQNFEEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAMQNYRKGKLEKIIDPQISSSIVEGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPEEDKCEGLVALDKPNDNEPKGGTSASVSDDISEVSVSAPLFSEVQNFQGR 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28376949 28383149 - CcPI632755_06g017980.1 Cco06g1798 182398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1798 876 Pfam Malectin-like domain 50 412 IPR024788 -
Cco06g1798 876 SMART serkin_6 540 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1798 876 Gene3D - 230 416 - -
Cco06g1798 876 Gene3D - 46 207 - -
Cco06g1798 876 PANTHER OS07G0166700 PROTEIN 528 818 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cco06g1798 876 Pfam Protein tyrosine and serine/threonine kinase 543 802 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1798 876 ProSiteProfiles Protein kinase domain profile. 540 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1798 876 MobiDBLite consensus disorder prediction 836 857 - -
Cco06g1798 876 FunFam Receptor-like protein kinase FERONIA 231 415 - -
Cco06g1798 876 FunFam Receptor-like protein kinase FERONIA 616 830 - -
Cco06g1798 876 CDD STKc_IRAK 546 811 - -
Cco06g1798 876 Gene3D Phosphorylase Kinase; domain 1 502 615 - -
Cco06g1798 876 FunFam Putative receptor-like protein kinase 47 207 - -
Cco06g1798 876 SUPERFAMILY Protein kinase-like (PK-like) 514 811 IPR011009 -
Cco06g1798 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1798 876 ProSitePatterns Protein kinases ATP-binding region signature. 546 568 IPR017441 GO:0005524(InterPro)
Cco06g1798 876 Gene3D Transferase(Phosphotransferase) domain 1 616 833 - -
Cco06g1798 876 FunFam receptor-like protein kinase FERONIA 502 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1338 Cco-Chr6:23765396 Cco06g1798 Cco-Chr6:28376949 1.60E-62 dispersed
Cco06g1798 Cco-Chr6:28376949 Cco11g1892 Cco-Chr11:31631667 2.50E-237 dispersed
Cco06g1798 Cco-Chr6:28376949 Cco09g0226 Cco-Chr9:2016225 2.10E-255 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86944 PF12819 Malectin_like 5.50E-35 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1798 - - - 0.0