Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1813 ATGGCGTTTCTTGGATTTCTCTTTGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAGCAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGTACAGCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCGTTGTCGTCACTGCTACAAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATACAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGCCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGACGTTCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGACGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGGTCAGACGTTTAGTGGGGTGCAGTTCTGA 756 50.66 MAFLGFLFVGLLLSLGCHSALGHSNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDAKWCLPNSVVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRTVISNDVAPAGWSFGQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28495715 28496615 + CcPI632755_06g018130.1 Cco06g1813 182413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1813 251 CDD DPBB_EXPA_N 28 154 - -
Cco06g1813 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 Gene3D - 16 155 IPR036908 -
Cco06g1813 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cco06g1813 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Cco06g1813 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cco06g1813 251 PANTHER EXPANSIN-A15 20 251 IPR002963 GO:0009664(InterPro)
Cco06g1813 251 SMART dpbb_1 64 149 IPR007112 -
Cco06g1813 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Cco06g1813 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cco06g1813 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cco06g1813 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Cco06g1813 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cco06g1813 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Cco06g1813 251 FunFam Expansin 159 251 - -
Cco06g1813 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cco06g1813 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Cco06g1813 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cco06g1813 251 Gene3D - 156 251 IPR036749 -
Cco06g1813 251 FunFam Expansin 18 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1813 Cco-Chr6:28495715 Cco11g0985 Cco-Chr11:16321521 3.10E-111 dispersed
Cco01g1803 Cco-Chr1:30718981 Cco06g1813 Cco-Chr6:28495715 1.50E-94 wgd
Cco05g2686 Cco-Chr5:34845054 Cco06g1813 Cco-Chr6:28495715 1.60E-116 wgd
Cco06g1813 Cco-Chr6:28495715 Cco09g2019 Cco-Chr9:34423639 1.30E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1813 - - - 0.0