Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1814 ATGGCCACTGTCACTACTCAAGCTTCCGCCGCTGTTTTCCGGCCATGCGCCGCCCGATCCAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTCCGGGCGACAATGGATTTGACCCACTGGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTTCGTACAAGCGGAGCTGGTGAATGGGCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTTTGCCGGAGGTTTTCACGAAGATCGGAATTATCAACGCCCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTTGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTTGCCCCCACTCTTGAAGCCAAAGAGAAGGAATTAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGATTCATTGTGCAACACAATGTGACAGGGAAGGGGCCATTTGACAACCTATTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 759 50.72 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28499730 28500913 + CcPI632755_06g018140.1 Cco06g1814 182414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1814 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Cco06g1814 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cco06g1814 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Cco06g1814 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Cco06g1814 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1814 Cco-Chr6:28499730 Cco10g1167 Cco-Chr10:24263188 1.40E-26 dispersed
Cco03g1228 Cco-Chr3:24224894 Cco06g1814 Cco-Chr6:28499730 4.00E-40 transposed
Cco03g1546 Cco-Chr3:30139622 Cco06g1814 Cco-Chr6:28499730 3.10E-53 transposed
Cco08g1778 Cco-Chr8:28895704 Cco06g1814 Cco-Chr6:28499730 1.40E-53 transposed
Cco09g2259 Cco-Chr9:36869967 Cco06g1814 Cco-Chr6:28499730 1.10E-39 transposed
Cco11g1413 Cco-Chr11:26888750 Cco06g1814 Cco-Chr6:28499730 4.80E-62 transposed
Cco01g1804 Cco-Chr1:30722571 Cco06g1814 Cco-Chr6:28499730 5.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1814 K08910 - csv:101222701 496.508