Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1821 ATGGCAGCAACATCAGCAACTATTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAACTCAACTCATTTTCCCAATCAAAGTCTGCTAGCTTAAGAATCAATTCACAAGATACTCTTCAGAGCTTTTGTGGCCTCAAGGCAGCTTCATCTCTTCATTGTAACTCAGAGTCATCTTTCCTAGGGAAACAGAGCATTGTTGCCCTATGGCATTGTCTTGCCCCGTCAGCTCAAAGAGTGAACCAGAATGTATGCAAAAATCTTCAACCTCAAGCTTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTTTGGCACTTCTCATCAAGATGTCGCCATTGGTTGCCACCCTAAACCTTTATGATATTGCAAATGTCAAGGGTGTCGCTGCTGATATTAGCCACTGCAACACTCCCTCAAAAGTTCAGGATTTCACTGGACCTTCTGAATTAGCCAATGCTTTAAAAGGTGTGGATGTTGTTGTCATACCTGCTGGGGTTCCGAGAAAGCCTGGTATGACTCGTGATGACCTCTTCAACATAAATGCCGGCATAGTGAAAAGTTTGGTCGAGGCGGTTGCTGATAATTGTCCCGATGCTTTCATCCATATCATTAGCAACCCTGTGAACTCAACTGTGCCAATAGCAGCAGAAGTTCTAAAGCAGAAAGGCGTGTATGATCCAAAGAAGCTTTTTGGGGTTACTACATTGGATGTTGTTCGGGCAAACACCTTCGTTGCTGAAAAGAAGAACCTTAAACTGATCGATGTTGATGTCCCAGTTGTTGGGGGACATGCAGGAATAACAATTCTTCCTTTGCTATCGAAGACAAGACCTTCAGTGAGTTTTACAGATGAACAAATTCAAGAACTGACTGTTAGGATTCAAAATGCGGGAACTGAAGTTGTGGAAGCGAAGGCAGGGGCAGGATCTGCTACCCTTTCAATGGCATATGCTGCAGCAAGATTTGTTGAATCATCTCTTCGTGCTTTGGACGGAGATAGTGATGTATATGAGTGCACTTTTGTGCAGTCTGATCTAACTGAGCTTCCCTTCTTTGCATCGAGGGTTAAGCTCGGGAGGAAAGGAATTGAAGCCTTCGTAACGTCTGATCTCCAGGGTTTATCCGAGTACGAGCAGAAGGCTCTTGAAGCTCTAAAGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAAAAGCAAGCTGTGGCTGCTTAA 1239 44.15 MAATSATILSIGATASLNTKLNSFSQSKSASLRINSQDTLQSFCGLKAASSLHCNSESSFLGKQSIVALWHCLAPSAQRVNQNVCKNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLSEYEQKALEALKPELKASIEKGIAFTQKQAVAA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28529441 28530679 + CcPI632755_06g018210.1 Cco06g1821 182421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1821 412 Gene3D - 92 238 - -
Cco06g1821 412 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 239 404 IPR022383 GO:0016616(InterPro)
Cco06g1821 412 PANTHER MALATE AND LACTATE DEHYDROGENASE 88 407 - GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0030060(PANTHER)
Cco06g1821 412 Pfam lactate/malate dehydrogenase, NAD binding domain 95 237 IPR001236 GO:0016491(InterPro)
Cco06g1821 412 Gene3D - 239 410 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cco06g1821 412 CDD MDH_glyoxysomal_mitochondrial 94 404 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cco06g1821 412 ProSitePatterns Malate dehydrogenase active site signature. 238 250 IPR001252 GO:0006108(InterPro)|GO:0016615(InterPro)
Cco06g1821 412 NCBIfam malate dehydrogenase 95 406 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cco06g1821 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 238 IPR036291 -
Cco06g1821 412 FunFam Malate dehydrogenase 92 238 - -
Cco06g1821 412 FunFam Malate dehydrogenase 239 407 - -
Cco06g1821 412 SUPERFAMILY LDH C-terminal domain-like 238 405 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1821 K00026 - - csv:101214377 746.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0596 Cco-Chr2:5796825 Cco06g1821 Cco-Chr6:28529441 8.30E-215 dispersed
Cco06g1821 Cco-Chr6:28529441 Cco07g1072 Cco-Chr7:24249356 2.50E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003196 1 4 2 3 2 1 2 2 1 4 1 1 1 3 2 1 1 2 0 2 3 1 1 1 0 0 1 4 2 1 50