Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1823 ATGGACGCCACTTGGAGGCCGAAGTGTGAAGTAATGGCCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTTGAATCAAAGGATATAGTGCCTATTAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGGATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGTTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTCACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCACAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCGGGAATCATCTTCAATAATAACAATAACATAATTAATGAAGATAATTCCCAGTATTTCTCTTCCTCCACCACTATTCATGATCAGGATGAAGAAGATGATGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATTCTGAAGAACATTCACCATACAACAAATCCGGCGGTTTTGAAGAACACCAACGACGGCCAAATTGGCGGTGGAGCCCCATAG 1035 38.16 MDATWRPKCEVMAFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFFESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQYFSSSTTIHDQDEEDDEMKYLLSDCSFSSTNCTLFILKNIHHTTNPAVLKNTNDGQIGGGAP 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28533512 28537046 - CcPI632755_06g018230.1 Cco06g1823 182423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1823 344 PANTHER PROTEIN RKD4 133 278 IPR044607 GO:0003700(InterPro)
Cco06g1823 344 MobiDBLite consensus disorder prediction 109 147 - -
Cco06g1823 344 Coils Coil 218 238 - -
Cco06g1823 344 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cco06g1823 344 MobiDBLite consensus disorder prediction 112 133 - -
Cco06g1823 344 Pfam RWP-RK domain 151 198 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1869 Cco-Chr4:33336143 Cco06g1823 Cco-Chr6:28533512 8.70E-16 dispersed
Cco05g1065 Cco-Chr5:9516016 Cco06g1823 Cco-Chr6:28533512 2.40E-19 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59548 PF02042 RWP-RK 6.50E-21 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1823 - - - 0.0