Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1823 ATGGACGCCACTTGGAGGCCGAAGTGTGAAGTAATGGCCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTTGAATCAAAGGATATAGTGCCTATTAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGGATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGTTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTCACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCACAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCGGGAATCATCTTCAATAATAACAATAACATAATTAATGAAGATAATTCCCAGTATTTCTCTTCCTCCACCACTATTCATGATCAGGATGAAGAAGATGATGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATTCTGAAGAACATTCACCATACAACAAATCCGGCGGTTTTGAAGAACACCAACGACGGCCAAATTGGCGGTGGAGCCCCATAG 1035 38.16 MDATWRPKCEVMAFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFFESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQYFSSSTTIHDQDEEDDEMKYLLSDCSFSSTNCTLFILKNIHHTTNPAVLKNTNDGQIGGGAP 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28533512 28537046 - CcPI632755_06g018230.1 Cco06g1823 182423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1823 344 PANTHER PROTEIN RKD4 133 278 IPR044607 GO:0003700(InterPro)
Cco06g1823 344 MobiDBLite consensus disorder prediction 109 147 - -
Cco06g1823 344 Coils Coil 218 238 - -
Cco06g1823 344 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cco06g1823 344 MobiDBLite consensus disorder prediction 112 133 - -
Cco06g1823 344 Pfam RWP-RK domain 151 198 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1823 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1869 Cco-Chr4:33336143 Cco06g1823 Cco-Chr6:28533512 8.70E-16 dispersed
Cco05g1065 Cco-Chr5:9516016 Cco06g1823 Cco-Chr6:28533512 2.40E-19 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1823 . 149 267 AtRKD Transcription Factor Family AT1G18790 73.1 3.0e-40 162.5
Cco06g1823 . 151 263 AtRKD Transcription Factor Family AT1G74480 70.8 3.2e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59548 PF02042 RWP-RK 6.50E-21 No_clan Cco TF