Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1830 ATGATGTTCAATCTCTTATGCCGGCGATTCTTCGTCGCCCCAAATCTCACGGAGGATGGACGGACCAACCGAGTCACAGCCCACTGCCCAACTCGTGAGTCGCGACTCTCTTCCATGGGAAGGACTTCAATTTTCTCGGCTCACTCTACCACTGTCGCGTTGATCTGGTTCACCTCTGCCGTCCTCTTCCTCTTTCTCTTCAAAATGGCCCTCCACAACTCTAGTTCCGCTTCTTCCTCAGATTCTTCAGTATCAAATTCTGAGTTAAGATCAAAATTATACGATAAGATGGAGAAGGATTTGGATGAGAAAGGGGCACTTTTCCTCAAGGACGGTGAAACATCTCAGTCTTTGTCACTTTCTGATATCTTCACTGTTAAGGATGGGTCTGTGACCCCTGTATTGAAGGCAGCAAATCCTCCTGTTCGTGCTAATGTTTTGTATCTAAGCACAGAGTACTCGATTCCCATATTTGAGGCTGTAAAATCTATATTTGATCCTTATTTTGATAAAGCAATTTGGTTTCAGAACTCTAGCTTGTACCATTTTAGCATGTTCCATGCATCACATCACATTACACCGATTCCTGCTACTGATGATGAGATTGAAGCTGAAGCAGCTGCTGTGAAGTCTGCAACAGAGCATATGTGCCGATTGAAAATAGTTTTAGATAGGGTTATTCTAACTTCAACAGGTGTTCTTCTAGGATGTTGGCAGGTAATATCAGGGACAGATCCTGTGACCATCCGTGCTAAACTAAGGGCAGCACTCCCACATGCACCTGAGAAGCAGCTTTATGATGCTGCTATTCTTCACACATCATTTGCTCGGCTTTTGGGTCACCCTAAAGTTTCAGAGACGCTCCATAGAAGTTTTGATGAACTCCAACTCTTTCATGAGTTGGTTGCTCGCTTGAATAAACAAATCCGTGGATTTGAGGCAGTGGTGTCGGAGCTGTGGTATGTGGAGGAATATGATGTTTTAGCTCTGGCTTTGAATGGAAGAATGAAGATGAGGTGGCAAAGAGATATTGGAGGATGCCAAGTCATAGGGCAAGAAAGCAAGATGAGGGGCAAAGAGAGGAAACGACAAAATGGGAGCGTTTCTCCCTTTTCTCACCCTCATTCTTTCTGTCTTCAACCTTTCCCTGCTTCTTTGTTCCTAGAAGTCTGGCATTTCACTCGGTTTCACTTGCTGTTGAAGATCATGGTCTCTGAGGTTCCTTCGAAATCGGTTGTTGAAACTGATGGTCCAGTTGTGGCGTCGGCGTCTAGGAATTGTCCTGGTAAGAAGAATCAGGTGAAAGTTCCTAAGAAAATTCACAAGGCTGAGAGGGAGAAGTTGAAGCGAGAACATTTAAACGATCTCTTCCTCGACCTTGCAAATGCACTTGAGCTGACAGAACCGAATAATGGAAAGGCATCTATATTGTGTGAAGCAAGTCGGCTGCTGAAAGACTTGTTTGGTCAGATTGAGTGCCTTAGAAAGGAGCATGCATCGTTGTTGTTAGAATCCCGATACGTCGACGTCGAGAAGAATGAACTGCGAGAAGAGACTTCTTCTTTAGCATCTCAGATTGAGAAACTGCAAAGTGAGTTACAATCAAGGGCTGTCCATTCTAAACCCGACTTAAATATTCCCCCACCTTCAGAGTTTCTGCAACAAGGGACAACGGTGCCACATTTCTCAGGGGAATGCCTTGGATTGCCTGTTATGGAACCTACATTGCAGCAAACACATGCAGTTTTTATCGTCCCCGTGCGGCCAGATCTCCCATCTTATCCAGCAATGGATGCAGCTCAATCCCCAACAATGCCTACCTCACATGTAAGCAAACCACATGCCAGATATCCAACACCAGCAGATTCGTGGCCTGCTGGACTTCTCAAATTGTCACAAACAACAGAAGCAAGTAAAGAAGTTTTAGCCATTGGTTGCAAGAGCATTCCAAATATTGGAGAAAGAGGATCTGACAGAACACTTGTTTGA 1989 44.7 MMFNLLCRRFFVAPNLTEDGRTNRVTAHCPTRESRLSSMGRTSIFSAHSTTVALIWFTSAVLFLFLFKMALHNSSSASSSDSSVSNSELRSKLYDKMEKDLDEKGALFLKDGETSQSLSLSDIFTVKDGSVTPVLKAANPPVRANVLYLSTEYSIPIFEAVKSIFDPYFDKAIWFQNSSLYHFSMFHASHHITPIPATDDEIEAEAAAVKSATEHMCRLKIVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRAALPHAPEKQLYDAAILHTSFARLLGHPKVSETLHRSFDELQLFHELVARLNKQIRGFEAVVSELWYVEEYDVLALALNGRMKMRWQRDIGGCQVIGQESKMRGKERKRQNGSVSPFSHPHSFCLQPFPASLFLEVWHFTRFHLLLKIMVSEVPSKSVVETDGPVVASASRNCPGKKNQVKVPKKIHKAEREKLKREHLNDLFLDLANALELTEPNNGKASILCEASRLLKDLFGQIECLRKEHASLLLESRYVDVEKNELREETSSLASQIEKLQSELQSRAVHSKPDLNIPPPSEFLQQGTTVPHFSGECLGLPVMEPTLQQTHAVFIVPVRPDLPSYPAMDAAQSPTMPTSHVSKPHARYPTPADSWPAGLLKLSQTTEASKEVLAIGCKSIPNIGERGSDRTLV 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28600497 28610669 + CcPI632755_06g018300.1 Cco06g1830 182430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1830 662 CDD bHLH_AtILR3_like 442 516 - -
Cco06g1830 662 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 437 487 IPR011598 GO:0046983(InterPro)
Cco06g1830 662 Coils Coil 512 532 - -
Cco06g1830 662 PANTHER TRANSMEMBRANE PROTEIN 43 339 - -
Cco06g1830 662 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 428 500 IPR036638 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1830 Cco-Chr6:28600497 Cco10g0542 Cco-Chr10:6492922 9.20E-06 dispersed
Cco06g1830 Cco-Chr6:28600497 Cco04g1798 Cco-Chr4:32875983 2.60E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g535 . . . . . . . Bma12g01000 . . Cma10g00185 . Car10g00175 Car11g00145 . . Cpe04g01506 Bhi02g00333 Tan09g2136 . . Hepe09g0127 . . Cla06g01597 Cam06g1771 Cec06g1823 Cco06g1830 Clacu06g1734 Cmu06g1678 Cre06g2494 . . Cone13ag0077 Cone19ag0077 . . . . . . . . Bpe07g00787 . . . . Cmo10g00202 Cmo11g00157 . . . . . Cpe18g00800 . . . . . . . . . . . . . . Lsi06g01473 Csa01g00226 Chy02g02506 Cme02g01892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011199 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 31