Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1839 | ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCTTAAACAAGATGTTCTTCTCAAGGTCTCTTTAATGGGGGACTTGGAAAAGCCCTCCATGGAAACTCTCTCAGTCCCATCAGCTTCTAATTCAGCTTGGAAGGAAGAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTTCATGAGATGAATCATCAAATTAGAGAGGAAAAAAAATCAACACAAAGAAATGGAAGTACCATAAATAATATTGATCATGAAATTGAAGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAACAAGAACACCACTTCTTCCTCCTCACTAACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAAACTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGGCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGGAAACAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCGCCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACACCACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTATCCCCCAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTTATCAAGCTTATAGTAGTATAAGCAAAACTAATGCAATAATAGGAATGCCATCAGACTTCGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCACCGCCCCCGCCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTAGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA | 1716 | 43.3 | MEAEKALPTIDDKVQSSGGGDEEAAPNLKQDVLLKVSLMGDLEKPSMETLSVPSASNSAWKEEDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQIREEKKSTQRNGSTINNIDHEIEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSETKEEEAGQTWPPSKMSKPSSLPPAPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTAAAAANLHGMNMYLSNTTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSSPFHKNIPSINNSYPPKYPFTSLDFGSSQPNFMSWNNNNNSGYQAYSSISKTNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSLVGGAQAAKSLTCSTSKSPSSSPGDSRENGK | 571 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28658087 | 28663070 | - | CcPI632755_06g018390.1 | Cco06g1839 | 182439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1839 | 571 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 59 | 529 | IPR044810 | GO:0003700(InterPro) | |
Cco06g1839 | 571 | MobiDBLite | consensus disorder prediction | 527 | 571 | - | - | |
Cco06g1839 | 571 | MobiDBLite | consensus disorder prediction | 533 | 571 | - | - | |
Cco06g1839 | 571 | MobiDBLite | consensus disorder prediction | 390 | 412 | - | - | |
Cco06g1839 | 571 | ProSiteProfiles | WRKY domain profile. | 246 | 312 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g1839 | 571 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cco06g1839 | 571 | FunFam | probable WRKY transcription factor 31 | 236 | 313 | - | - | |
Cco06g1839 | 571 | Pfam | WRKY DNA -binding domain | 252 | 310 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g1839 | 571 | MobiDBLite | consensus disorder prediction | 188 | 238 | - | - | |
Cco06g1839 | 571 | Coils | Coil | 65 | 120 | - | - | |
Cco06g1839 | 571 | SUPERFAMILY | WRKY DNA-binding domain | 244 | 312 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g1839 | 571 | SMART | WRKY_cls | 251 | 311 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g1839 | 571 | MobiDBLite | consensus disorder prediction | 47 | 72 | - | - | |
Cco06g1839 | 571 | Gene3D | WRKY domain | 236 | 313 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0208 | Cco-Chr2:2028161 | Cco06g1839 | Cco-Chr6:28658087 | 8.80E-39 | dispersed | |
Cco04g1962 | Cco-Chr4:33908900 | Cco06g1839 | Cco-Chr6:28658087 | 8.30E-41 | dispersed | |
Cco05g1152 | Cco-Chr5:10591894 | Cco06g1839 | Cco-Chr6:28658087 | 2.90E-41 | dispersed | |
Cco06g1839 | Cco-Chr6:28658087 | Cco10g1279 | Cco-Chr10:25666439 | 5.50E-23 | dispersed | |
Cco01g1582 | Cco-Chr1:28518814 | Cco06g1839 | Cco-Chr6:28658087 | 5.10E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59553 | PF03106 | WRKY | 1.30E-23 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1839 | - | - | - | 0.0 |