Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1839 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCTTAAACAAGATGTTCTTCTCAAGGTCTCTTTAATGGGGGACTTGGAAAAGCCCTCCATGGAAACTCTCTCAGTCCCATCAGCTTCTAATTCAGCTTGGAAGGAAGAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTTCATGAGATGAATCATCAAATTAGAGAGGAAAAAAAATCAACACAAAGAAATGGAAGTACCATAAATAATATTGATCATGAAATTGAAGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAACAAGAACACCACTTCTTCCTCCTCACTAACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAAACTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGGCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGGAAACAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCGCCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACACCACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTATCCCCCAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTTATCAAGCTTATAGTAGTATAAGCAAAACTAATGCAATAATAGGAATGCCATCAGACTTCGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCACCGCCCCCGCCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTAGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1716 43.3 MEAEKALPTIDDKVQSSGGGDEEAAPNLKQDVLLKVSLMGDLEKPSMETLSVPSASNSAWKEEDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQIREEKKSTQRNGSTINNIDHEIEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSETKEEEAGQTWPPSKMSKPSSLPPAPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTAAAAANLHGMNMYLSNTTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSSPFHKNIPSINNSYPPKYPFTSLDFGSSQPNFMSWNNNNNSGYQAYSSISKTNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSLVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28658087 28663070 - CcPI632755_06g018390.1 Cco06g1839 182439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1839 571 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 529 IPR044810 GO:0003700(InterPro)
Cco06g1839 571 MobiDBLite consensus disorder prediction 527 571 - -
Cco06g1839 571 MobiDBLite consensus disorder prediction 533 571 - -
Cco06g1839 571 MobiDBLite consensus disorder prediction 390 412 - -
Cco06g1839 571 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1839 571 MobiDBLite consensus disorder prediction 1 29 - -
Cco06g1839 571 FunFam probable WRKY transcription factor 31 236 313 - -
Cco06g1839 571 Pfam WRKY DNA -binding domain 252 310 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1839 571 MobiDBLite consensus disorder prediction 188 238 - -
Cco06g1839 571 Coils Coil 65 120 - -
Cco06g1839 571 SUPERFAMILY WRKY DNA-binding domain 244 312 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1839 571 SMART WRKY_cls 251 311 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1839 571 MobiDBLite consensus disorder prediction 47 72 - -
Cco06g1839 571 Gene3D WRKY domain 236 313 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0208 Cco-Chr2:2028161 Cco06g1839 Cco-Chr6:28658087 8.80E-39 dispersed
Cco04g1962 Cco-Chr4:33908900 Cco06g1839 Cco-Chr6:28658087 8.30E-41 dispersed
Cco05g1152 Cco-Chr5:10591894 Cco06g1839 Cco-Chr6:28658087 2.90E-41 dispersed
Cco06g1839 Cco-Chr6:28658087 Cco10g1279 Cco-Chr10:25666439 5.50E-23 dispersed
Cco01g1582 Cco-Chr1:28518814 Cco06g1839 Cco-Chr6:28658087 5.10E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59553 PF03106 WRKY 1.30E-23 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1839 - - - 0.0