Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1843 ATGGGTCCTTTCATTTGGGTCTTCTCCTTCATTTTAGCAGCTACCCTTTTGAGCCACCGCTGTTTTTCTCTCACTGAAGATGGTCTAACATTGTTGGAGATCAAAAGTACTTTAAATGACACTAAGGACGTCCTCAGTAATTGGAACCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCGAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATTCCCAATGAACTTGCTAATTGTTCTGAACTTAGAGCCCTGTACTTGAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATGTTGGAAACCTTTCATATCTTACCATACTTGATTTGTCAAGCAATTCCCTTAAGGGTAGTATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACTAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGTAACAACTCGTTCTTTGGCAATCAAGGTCTTTGTGGCCGACAAGTGAACAAGCCGTGCCGGACCTCACTGGGGTTTCCTGTCATTTTACCACATGCTGCAAGTGATGAAGCTGCAGTTCCTGCCAAACGGTCCTCTCATTACATGAAAGGACTGTTGATTGGTGCAATATCGACAGCAGGGTTTGTATTGGTCATATTTATCGTATTCATGTGGACTCGTTTGGTGTCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGCGAAACAAGTGCGAAGCTTATTACATTTCATGGTGATCTACCGTATCCAACACATGAGATCATAGAAAAGCTGGAAGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTTTTGGCACTGTGTATCGGATGGTCATGAATGATTCTGGAGCTTTTGCTGTGAAGAAAATTGATAGGACTCAAGACGGTCCAGACCAAGTTGTTGAAAGAGAATTGGAGATATTGGGTAGCATTAAGCACATAAATTTAGTGAAATTGCGTGGTTATTGCCGGCTTCCTTCTTCAAAGCTTCTCATATATGACTATCTGGCGGCGGGTAGCTTGGATGATTTCTTGCACGAATATGGACCACAAAAGTCTTTGGATTGGAGTGCTCGGTTAAACATAGCGCTAGGTTCTGCTCGAGGATTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTTCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGGGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTAATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGGAAAGTGGGGTAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCGAGTGATCCATTTTTCTCAAAGCGGGGCGTAAATATTGTTGGTTGGTTGAACACGCTGCGGGGAGAAGACCAATTGGAGAACATAGTTGATAATAGGTGCCGGAATGCAGATGTCGAAACTGTAGAAGCGATTCTCGAAATAGCGGCGAGGTGCACCGATGGCAACCCGACTATGCGACCTACAATGAACCAAGTACTGCAGCAGCTAGAGCAAGAGGTGATGTCGCCTTACCCGAGCGATTACACCGAGTCTCACTCGGATTATTCGTGA 1803 43.87 MGPFIWVFSFILAATLLSHRCFSLTEDGLTLLEIKSTLNDTKDVLSNWNPSDESPCKWTGISCHPEDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNVGNLSYLTILDLSSNSLKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQGLCGRQVNKPCRTSLGFPVILPHAASDEAAVPAKRSSHYMKGLLIGAISTAGFVLVIFIVFMWTRLVSKKERTAKSYMEVKKQKNRETSAKLITFHGDLPYPTHEIIEKLEALNETNVVGSGGFGTVYRMVMNDSGAFAVKKIDRTQDGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLAAGSLDDFLHEYGPQKSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVNGDSHVTTVVAGTFGYLAPEYLESGVGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCRNADVETVEAILEIAARCTDGNPTMRPTMNQVLQQLEQEVMSPYPSDYTESHSDYS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28696661 28700245 - CcPI632755_06g018430.1 Cco06g1843 182443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1843 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Cco06g1843 600 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cco06g1843 600 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1843 600 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 86 IPR050647 -
Cco06g1843 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1843 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 591 - -
Cco06g1843 600 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cco06g1843 600 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cco06g1843 600 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Cco06g1843 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Cco06g1843 600 SUPERFAMILY L domain-like 22 186 - -
Cco06g1843 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cco06g1843 600 SUPERFAMILY Protein kinase-like (PK-like) 290 581 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1843 Cco-Chr6:28696661 Cco11g1674 Cco-Chr11:29582767 4.90E-123 dispersed
Cco02g0400 Cco-Chr2:3619958 Cco06g1843 Cco-Chr6:28696661 1.30E-08 transposed
Cco01g1573 Cco-Chr1:28443333 Cco06g1843 Cco-Chr6:28696661 4.90E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86945 PF00069 Pkinase 1.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1843 - - - 0.0