Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1846 | ATGGATAAAGTTTTCGAGGGTCGAGTTCCTGTGATTGAACTTCGAAAAGCTGTACCAGAGTGTTCGACCGGAGATACTCACGGCGGAATTGAAGACATCTCAATCTTTCTCACCAGCGCTACTGCAAATCGTTATCTGGCATTGGGATTTGAGTCTCACATAGCAACGCTGAGGAAAATGGAAGAAAAGGGAGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCAGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAAGTCTTGAAGTTTTTGGGGTTTATGTGGAACCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCGCTGTTGGTTATCAACTCAACAATTAGTTTTATTGAGGAAAATAATGCCGGTAACGCTGCCGCTGCTCTAATGGCGAGTTTAGCCCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGCGTGCAAGATGCGTCGGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATTATTCCAGCTGATGCGCGTCTTCTAGAGGGGGATCCATTGAAAATCGACCAGTCTGCTCTTACAGGCGAGTCTCTTCCTGTTACGAAAGGTCCAGGCGATGGCATATATTCTGGTTCTACTTGTAAGCAAGGAGAGATTGAAGCGGTGGTCATCGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGGCACTTCCAAAAGGTCTTGACTGCAATCGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTACAGAAATTATTGTCATGTATCCAATTCAAGATCGTGAATATCGTCCTGGAATCGACAATCTTCTCGTGCTTCTAATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAGATGGCAGGTATGGACGTGCTTTGCAGTGACAAAACTGGAACACTGACATTAAACAAGCTAACTGTTGATAAAAATCTTGTTGAGGTCTTTGCTAAAGGAGTGGATGTGGATACTGTGGTTCTAATGGCAGCCCGGGCATCAAGAACAGAGAACCAAGATGCTATTGATACCGCTATTGTTGGGATGCTTGCTGACCCGAAAGAGGCTCGTGCCGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACCGATAAGCGGACTGCATTGACTTACATAGACCACGAGGGTAAAATGCATAGAGTCAGCAAAGGTGCACCAGAGCAGATTCTGAACCTTGCACACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCCGTTATAGACAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTAGGAAGGAGAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTTCTGCCACTGTTTGACCCACCAAGGCATGACAGTGCAGAGACTATTAGGAGGGCCTTAAATCTTGGAGTGAACGTGAAGATGATTACCGGTGACCAGCTGGCCATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTAGGTCAGGACAAGGATGAGTCTATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCAAGGAAACATATCTGTGGAATGACTGGCGATGGAGTAAATGATGCTCCTGCCCTTAAAAAAGCAGACATAGGGATAGCTGTCGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGACATAGTCCTTACAGAGCCCGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGTCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCTTTTATGGTGCTTATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCGAAGGATAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCTGAAATTTTTACAACTGGCATTATTCTTGGTGGCTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCAGCCTATAAGACAAACTTTTTTCCACGAGTCTTTGGGGTGGCAACTCTGGAGAAAACTGCTCATGATGACATCAGGAAACTGGCCTCAGCAGTGTATCTGCAAGTAAGCACTATAAGTCAGGCTCTCATATTCGTTACTCGCTCTCGAAGTTGGTCTTATGTGGAACGTCCTGGGTTATTACTGGTTGCGGCTTTTCTGGTTGCACAGCTGATTGCTACTTTAATTGCTGTTTACGCAAATTGGAGCTTTGCTGCCATCGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATCATCTTTTACATCCCACTTGATCTCATCAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAGAGGATTGCCTTTACGAGGCAAAAGGATTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCCGACGCCAAAATGTTCCACGACCGAACTCACTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGCGGGAACTACACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTAAAAGGACTTGACATTGACACAATTCAGCAAGCTTACACAGTATGA | 3057 | 45.27 | MDKVFEGRVPVIELRKAVPECSTGDTHGGIEDISIFLTSATANRYLALGFESHIATLRKMEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTNFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV | 1018 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 28719686 | 28727805 | - | CcPI632755_06g018460.1 | Cco06g1846 | 182446 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1846 | 1018 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 395 | 401 | IPR018303 | - | |
| Cco06g1846 | 1018 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 79 | 915 | IPR023298 | - | |
| Cco06g1846 | 1018 | FunFam | ATPase 4 plasma membrane-type | 637 | 883 | - | - | |
| Cco06g1846 | 1018 | Pfam | E1-E2 ATPase | 194 | 372 | - | - | |
| Cco06g1846 | 1018 | NCBIfam | HAD-IC family P-type ATPase | 627 | 740 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | NCBIfam | HAD-IC family P-type ATPase | 165 | 600 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | Gene3D | - | 405 | 552 | IPR023299 | GO:0000166(InterPro) | |
| Cco06g1846 | 1018 | SFLD | p-type atpase | 375 | 703 | IPR044492 | - | |
| Cco06g1846 | 1018 | CDD | P-type_ATPase_H | 98 | 909 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cco06g1846 | 1018 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 98 | 874 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cco06g1846 | 1018 | Gene3D | - | 196 | 280 | - | - | |
| Cco06g1846 | 1018 | Pfam | haloacid dehalogenase-like hydrolase | 389 | 666 | - | - | |
| Cco06g1846 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 393 | 407 | - | - | |
| Cco06g1846 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 652 | 671 | - | - | |
| Cco06g1846 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 569 | 579 | - | - | |
| Cco06g1846 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 547 | 558 | - | - | |
| Cco06g1846 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 687 | - | - | |
| Cco06g1846 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 243 | 257 | - | - | |
| Cco06g1846 | 1018 | FunFam | Plasma membrane ATPase | 196 | 280 | - | - | |
| Cco06g1846 | 1018 | FunFam | Plasma membrane ATPase | 405 | 552 | - | - | |
| Cco06g1846 | 1018 | SMART | Cation_ATPase_N_a_2 | 79 | 151 | IPR004014 | - | |
| Cco06g1846 | 1018 | SUPERFAMILY | HAD-like | 389 | 699 | IPR036412 | - | |
| Cco06g1846 | 1018 | Gene3D | - | 967 | 1018 | - | - | |
| Cco06g1846 | 1018 | SUPERFAMILY | Calcium ATPase, transduction domain A | 196 | 293 | IPR008250 | - | |
| Cco06g1846 | 1018 | Coils | Coil | 969 | 989 | - | - | |
| Cco06g1846 | 1018 | Gene3D | - | 158 | 883 | - | - | |
| Cco06g1846 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 652 | 668 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 624 | 640 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 828 | 849 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 509 | 527 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 683 | 708 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1846 | 1018 | FunFam | Plasma membrane ATPase | 545 | 700 | - | - | |
| Cco06g1846 | 1018 | Pfam | Cation transporter/ATPase, N-terminus | 82 | 145 | IPR004014 | - | |
| Cco06g1846 | 1018 | Gene3D | - | 390 | 689 | IPR023214 | - | |
| Cco06g1846 | 1018 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 81 | 966 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cco06g1846 | 1018 | SFLD | Haloacid Dehalogenase | 375 | 703 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1846 | Cco-Chr6:28719686 | Cco08g1428 | Cco-Chr8:26172280 | 0.00E+00 | dispersed | |
| Cco01g1570 | Cco-Chr1:28419625 | Cco06g1846 | Cco-Chr6:28719686 | 0.00E+00 | wgd | |
| Cco06g1846 | Cco-Chr6:28719686 | Cco09g2045 | Cco-Chr9:34808820 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1846 | K01535 | - | csv:101217264 | 1806.19 |