Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1846 ATGGATAAAGTTTTCGAGGGTCGAGTTCCTGTGATTGAACTTCGAAAAGCTGTACCAGAGTGTTCGACCGGAGATACTCACGGCGGAATTGAAGACATCTCAATCTTTCTCACCAGCGCTACTGCAAATCGTTATCTGGCATTGGGATTTGAGTCTCACATAGCAACGCTGAGGAAAATGGAAGAAAAGGGAGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCAGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAAGTCTTGAAGTTTTTGGGGTTTATGTGGAACCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCGCTGTTGGTTATCAACTCAACAATTAGTTTTATTGAGGAAAATAATGCCGGTAACGCTGCCGCTGCTCTAATGGCGAGTTTAGCCCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGCGTGCAAGATGCGTCGGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATTATTCCAGCTGATGCGCGTCTTCTAGAGGGGGATCCATTGAAAATCGACCAGTCTGCTCTTACAGGCGAGTCTCTTCCTGTTACGAAAGGTCCAGGCGATGGCATATATTCTGGTTCTACTTGTAAGCAAGGAGAGATTGAAGCGGTGGTCATCGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGGCACTTCCAAAAGGTCTTGACTGCAATCGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTACAGAAATTATTGTCATGTATCCAATTCAAGATCGTGAATATCGTCCTGGAATCGACAATCTTCTCGTGCTTCTAATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAGATGGCAGGTATGGACGTGCTTTGCAGTGACAAAACTGGAACACTGACATTAAACAAGCTAACTGTTGATAAAAATCTTGTTGAGGTCTTTGCTAAAGGAGTGGATGTGGATACTGTGGTTCTAATGGCAGCCCGGGCATCAAGAACAGAGAACCAAGATGCTATTGATACCGCTATTGTTGGGATGCTTGCTGACCCGAAAGAGGCTCGTGCCGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACCGATAAGCGGACTGCATTGACTTACATAGACCACGAGGGTAAAATGCATAGAGTCAGCAAAGGTGCACCAGAGCAGATTCTGAACCTTGCACACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCCGTTATAGACAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTAGGAAGGAGAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTTCTGCCACTGTTTGACCCACCAAGGCATGACAGTGCAGAGACTATTAGGAGGGCCTTAAATCTTGGAGTGAACGTGAAGATGATTACCGGTGACCAGCTGGCCATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTAGGTCAGGACAAGGATGAGTCTATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCAAGGAAACATATCTGTGGAATGACTGGCGATGGAGTAAATGATGCTCCTGCCCTTAAAAAAGCAGACATAGGGATAGCTGTCGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGACATAGTCCTTACAGAGCCCGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGTCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCTTTTATGGTGCTTATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCGAAGGATAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCTGAAATTTTTACAACTGGCATTATTCTTGGTGGCTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCAGCCTATAAGACAAACTTTTTTCCACGAGTCTTTGGGGTGGCAACTCTGGAGAAAACTGCTCATGATGACATCAGGAAACTGGCCTCAGCAGTGTATCTGCAAGTAAGCACTATAAGTCAGGCTCTCATATTCGTTACTCGCTCTCGAAGTTGGTCTTATGTGGAACGTCCTGGGTTATTACTGGTTGCGGCTTTTCTGGTTGCACAGCTGATTGCTACTTTAATTGCTGTTTACGCAAATTGGAGCTTTGCTGCCATCGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATCATCTTTTACATCCCACTTGATCTCATCAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAGAGGATTGCCTTTACGAGGCAAAAGGATTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCCGACGCCAAAATGTTCCACGACCGAACTCACTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGCGGGAACTACACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTAAAAGGACTTGACATTGACACAATTCAGCAAGCTTACACAGTATGA 3057 45.27 MDKVFEGRVPVIELRKAVPECSTGDTHGGIEDISIFLTSATANRYLALGFESHIATLRKMEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTNFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 1018
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 28719686 28727805 - CcPI632755_06g018460.1 Cco06g1846 182446
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1846 1018 ProSitePatterns E1-E2 ATPases phosphorylation site. 395 401 IPR018303 -
Cco06g1846 1018 SUPERFAMILY Calcium ATPase, transmembrane domain M 79 915 IPR023298 -
Cco06g1846 1018 FunFam ATPase 4 plasma membrane-type 637 883 - -
Cco06g1846 1018 Pfam E1-E2 ATPase 194 372 - -
Cco06g1846 1018 NCBIfam HAD-IC family P-type ATPase 627 740 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 NCBIfam HAD-IC family P-type ATPase 165 600 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 Gene3D - 405 552 IPR023299 GO:0000166(InterPro)
Cco06g1846 1018 SFLD p-type atpase 375 703 IPR044492 -
Cco06g1846 1018 CDD P-type_ATPase_H 98 909 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco06g1846 1018 NCBIfam plasma-membrane proton-efflux P-type ATPase 98 874 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco06g1846 1018 Gene3D - 196 280 - -
Cco06g1846 1018 Pfam haloacid dehalogenase-like hydrolase 389 666 - -
Cco06g1846 1018 PRINTS P-type cation-transporting ATPase superfamily signature 393 407 - -
Cco06g1846 1018 PRINTS P-type cation-transporting ATPase superfamily signature 652 671 - -
Cco06g1846 1018 PRINTS P-type cation-transporting ATPase superfamily signature 569 579 - -
Cco06g1846 1018 PRINTS P-type cation-transporting ATPase superfamily signature 547 558 - -
Cco06g1846 1018 PRINTS P-type cation-transporting ATPase superfamily signature 675 687 - -
Cco06g1846 1018 PRINTS P-type cation-transporting ATPase superfamily signature 243 257 - -
Cco06g1846 1018 FunFam Plasma membrane ATPase 196 280 - -
Cco06g1846 1018 FunFam Plasma membrane ATPase 405 552 - -
Cco06g1846 1018 SMART Cation_ATPase_N_a_2 79 151 IPR004014 -
Cco06g1846 1018 SUPERFAMILY HAD-like 389 699 IPR036412 -
Cco06g1846 1018 Gene3D - 967 1018 - -
Cco06g1846 1018 SUPERFAMILY Calcium ATPase, transduction domain A 196 293 IPR008250 -
Cco06g1846 1018 Coils Coil 969 989 - -
Cco06g1846 1018 Gene3D - 158 883 - -
Cco06g1846 1018 PRINTS H+-transporting ATPase (proton pump) signature 652 668 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 PRINTS H+-transporting ATPase (proton pump) signature 624 640 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 PRINTS H+-transporting ATPase (proton pump) signature 828 849 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 PRINTS H+-transporting ATPase (proton pump) signature 509 527 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 PRINTS H+-transporting ATPase (proton pump) signature 683 708 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1846 1018 FunFam Plasma membrane ATPase 545 700 - -
Cco06g1846 1018 Pfam Cation transporter/ATPase, N-terminus 82 145 IPR004014 -
Cco06g1846 1018 Gene3D - 390 689 IPR023214 -
Cco06g1846 1018 PANTHER CALCIUM-TRANSPORTING ATPASE 81 966 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cco06g1846 1018 SFLD Haloacid Dehalogenase 375 703 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1846 Cco-Chr6:28719686 Cco08g1428 Cco-Chr8:26172280 0.00E+00 dispersed
Cco01g1570 Cco-Chr1:28419625 Cco06g1846 Cco-Chr6:28719686 0.00E+00 wgd
Cco06g1846 Cco-Chr6:28719686 Cco09g2045 Cco-Chr9:34808820 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1846 K01535 - csv:101217264 1806.19