Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1847 ATGATGTACTCAAAACCTCGGGCTAGGGGCACAATTTGGGCTTACCTCACGGGCCTAACGCGCCCCCTATTTTCCGTCCAACTTCGTAGGAAAAGAGCTCGACGCAGGGCAGAGGTGAAAAATGCAGAGATAGTTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCTTCAGCTCTAATCTTCAGCTACCCATTCAACTTCCAGATTATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCAAACAGTGCTAGATCATTTTTTCTTAGTGGATCACGATGTAATGCAGATGGGACTTCATGTACATGCCCTGAAGATGAAACTTGCGTTTCCCAGAGACGGAATGCTAGAAATGAAATCCTGCCCTCACAAAAGCCATCCACCTTGGTAGCCAATAGTTCACCTAGAGTAGGACCTTTAATTGCAGAAGAAGCAGCAAAAGTAATTATATCTCACAAAACTGACAATGTTGATCTCTCAGTTTCCATACAGCAAGTTACGAACACTGGCCCCAATCACCAGAGGGGGGCAGAATGTGTAAGATATGCCAGTGGCCTTAATACTGTTCTGGATGGTGAGTGCACTTCACCAAAGATTGCAGATCAGGTTGTTAAGGCAGGTATTATGGCTGTAAACTTATTCTCTGACTTTGTGCATTTTAAAGTCCCCTTATCTGACTATGGTGGAACATTTAGCTCATCTACAAATTGCATGGTTGATCCTACTCGGTCCATTACTTCTGTCAAACCCTCAAAAATCAAACATTTGAGAAGAGAGAACATTTCTAGTGTCCATTCCAGACCATCAGTTGAAATCCCTATGGATTCTAAGCCCCAAAGTAGCAGTAACCATCATGGTTCAAATTGCAAGCCCACGCAATCCAATTATGTCAAAGGCTCAAAGCAAGTTCCCGAGGCTAGAACACAAAAGTCAGTGGTATTTCACAATATCTCCTCAGACAAGTGTGATAAAAGGACTTTACCACAGAGAACAAGGGTTCATTCAAATAGCTTTACTTCACATTTCCATTCCAATGCACAGACCACATTCACAAATTCTTCTAAAAATTTGAAAAAGCTTCCAGATAATTTAAAAAGCTCGACAGGAATGGCACCAATCACTTCACCGATTTTGAATGCCCCACATGTTGTGGAGAGTGTTTCTTGCATATTGCAACAACTTAAATGGGGCCCTACTGCAGAAGAGGCTATTGGGAAATTGAACTGTTCAATAGATGCTTACCAGGCAAACCAAATTCTGAAGCGGGTAGATGACCACTCTGTTGCTCTTGGGTTCTTTTATTGGTTAAAGCGCCTAGCTAGGTTTAGACATGATGGGCACACTTATACTACTATGATTGGCCTCCTTGGTCGGGCCAAACAGTTTGCTGCTATAAATAGATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACGTATAATCGTATAATTCATAGTTATGGTCGTGCAAACTATTTGCAAGAAGCTGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTGAGCCCGATAGAGTCACCTACTGCACGCTCATTGACATTCATGCAAAATCTGGCTTTCTTGATGTTGCCATGGGCATGTATGAGAAGATGCAAGACGCTGGCCTCACTCCCGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGTAGGATGGTTGATCAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTATCGTGATATGCAACAATCAGGCTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTAGGTCATTGCGGTTTCCTTGAGGAGGCAGAAGGTATATTTATTGAGATGCAAAAGAAGAACTGGGTCCCTGATGAACCTGTTTATGGTCTATTAGTTGACTTGTGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAATGCGGGTTTAAAGCCAAATGTGCCTACTTGCAATTCCTTGCTTAGTGCCTTTCTTAGGGTACACCAACTAACAGATGCTTATCAGCTGTTACAATCCATGCTGACTTTTGGTTTAAAACCTTCTCTACAAACTTATACCTTGCTTCTCAGTTGTTGCACTGATGCGCAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACCGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCCGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGATAGAGAGAGCAAGAGGGGGCTTGTGGACGCAGTTGTAGATTTTCTTCATAAATCAGGACTCAAGGAGGAGGCAGGTTGTGTCTGGGAGGCTGCTATGCAAAAGAATGTCTATCCAGATGCTGTAAAGGAGAAAAGCTCATGTTATTGGCTCATTAACTTGCACGTCATGTCTGATGGCACCGCGGTTACAGCTTTGTCTAGGACTCTTGCTTGGTTTCGCCAGCAAATGCTTCATTTAGGTGTCGGTCCCAACCGAATTGATATTGTGACTGGATGGGGTCGGCGAAGTAAGGTCACTGGATCTTCTCTAGTGAGGCAGGCAGTTCAGGACCTGTTGAGCATTTTTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTGGGGTGTGGTGAGCCTCTAAGTAGATGGTTGAACCAATCTTATGTGGAGAGGATGCATTTGTTGTAG 2823 43.39 MMYSKPRARGTIWAYLTGLTRPLFSVQLRRKRARRRAEVKNAEIVEGSAASLSLRSSALIFSYPFNFQIMLRAKQIGSLSNSARSFFLSGSRCNADGTSCTCPEDETCVSQRRNARNEILPSQKPSTLVANSSPRVGPLIAEEAAKVIISHKTDNVDLSVSIQQVTNTGPNHQRGAECVRYASGLNTVLDGECTSPKIADQVVKAGIMAVNLFSDFVHFKVPLSDYGGTFSSSTNCMVDPTRSITSVKPSKIKHLRRENISSVHSRPSVEIPMDSKPQSSSNHHGSNCKPTQSNYVKGSKQVPEARTQKSVVFHNISSDKCDKRTLPQRTRVHSNSFTSHFHSNAQTTFTNSSKNLKKLPDNLKSSTGMAPITSPILNAPHVVESVSCILQQLKWGPTAEEAIGKLNCSIDAYQANQILKRVDDHSVALGFFYWLKRLARFRHDGHTYTTMIGLLGRAKQFAAINRLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLNAGLKPNVPTCNSLLSAFLRVHQLTDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLHLGVGPNRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLNQSYVERMHLL 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28740084 28744288 + CcPI632755_06g018470.1 Cco06g1847 182447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 654 688 IPR002885 -
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Cco06g1847 940 PANTHER OS03G0856100 PROTEIN 248 935 - -
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 689 723 IPR002885 -
Cco06g1847 940 ProSiteProfiles Smr domain profile. 840 921 IPR002625 -
Cco06g1847 940 MobiDBLite consensus disorder prediction 264 309 - -
Cco06g1847 940 SMART SMR_2 837 923 IPR002625 -
Cco06g1847 940 Gene3D Tetratricopeptide repeat domain 539 614 IPR011990 GO:0005515(InterPro)
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 653 IPR002885 -
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Cco06g1847 940 Pfam PPR repeat 657 685 IPR002885 -
Cco06g1847 940 Pfam PPR repeat 447 476 IPR002885 -
Cco06g1847 940 SUPERFAMILY SMR domain-like 838 918 IPR036063 -
Cco06g1847 940 Pfam PPR repeat family 688 735 IPR002885 -
Cco06g1847 940 Pfam PPR repeat family 478 526 IPR002885 -
Cco06g1847 940 Pfam PPR repeat family 583 630 IPR002885 -
Cco06g1847 940 Gene3D - 816 919 IPR036063 -
Cco06g1847 940 Gene3D Tetratricopeptide repeat domain 626 743 IPR011990 GO:0005515(InterPro)
Cco06g1847 940 Gene3D Tetratricopeptide repeat domain 399 529 IPR011990 GO:0005515(InterPro)
Cco06g1847 940 NCBIfam pentatricopeptide repeat 621 655 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 586 619 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 516 550 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 551 584 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 657 690 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 692 724 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 481 514 IPR002885 -
Cco06g1847 940 NCBIfam pentatricopeptide repeat 446 480 IPR002885 -
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Cco06g1847 940 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Cco06g1847 940 Pfam PPR repeat 545 577 IPR002885 -
Cco06g1847 940 SUPERFAMILY HCP-like 479 687 - -
Cco06g1847 940 MobiDBLite consensus disorder prediction 257 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1847 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33