Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1848 ATGGCAATGATAAGCACCATAAATGAGGGAGAGACCACTCCACTTCATTCCCCGCCCAATCCATCTTGCGCGGTTCTTGGACGATTCATCTTCTTCTCCGGCAACGGCAATCTTTCTCCATTAACCGCCACCGGAATCGTTACGTCTAAGACTAGGTTCTTGATGGCGCGCAAGAAGAGAAACACTGATCCGCGTGCTAAACAATCTCCGGCGGGTCCAAGTGTGTCGAACGCGGCGGAAAAGAGTTCAGTATCTGACAGGGCAAGTAATCAGAACCAAAGTAGGATTGAGCCAGTGGTTATCGATGAATCCGATGGCTTGTCTTCTTCTACAATTAAACTCGAATGCGAGAAGGCTCTTACTGCAATTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAGTTGAGTTCGAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTTTGTAAAAGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGACATTTGAAGAATGCGATTGAGTCTGCTCGCAAAGCAGTCCAGCTCTCACCAAACTCGATTGAGTTTTCTCATTTCTATGCAAATTTGCTATACGAGGCTGCAAATGATGCCAAGGAGTACGAGGAGGTGGTGCAAGAATGTGAGCGGGCCCTTGGAATTGAAAACCCAATTGATCCCGCTAAAGAAAGCTTGCAAGATGAAAAGAGTCAGAAAATACCTACTGCCGAAGCAAGAATTACACATGTTCAGACTGAATTGAGGCAGTTGATTCAAAAATCAAATATATATTCCCTATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTCAATTACGATTAGAAGAGTGGCAGAGGACCCGATGGAGGTGAGGATGGTTCAAGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAGGAGCGAAGGAAGGAGATCGAAGTTCGTGTTGCTGCTGCAAGGCTGGTGCAACAGAAGTCTGAGACGCCTCAAATGCAGAATGAAGGAGGTAAAGCTGATCGAACCCCGGAATCATCTTCAGGGCCTAGTACAAGAGTTGGTGAGCGGCGGAAACATGGCAATGTGCGGAAACTTGGCTCTTCAGCTGAGAGAAAGAATTGGGTTTGTTCTTTTTGGAGTTCCATGAGTACAGAATCAAAGAAAGATTTGCTCAAGATCAAAATTAGTGATCTTGAGACTTATTTTAGTTCCTTAAAGGATGCCTCGGCAAATGAAGTTATTTTAGAAGCTTTGTCCTTTTATGACGCCAATAAAACATGGAAATTCTGGGTTTGCTGCAAATGTGATAAGAAATCTGTGGATTCGGAATCCCATATGCACCACGTGGTTCAGGAACACCTGGGAAACCTTTTGCCGAAAATGCAATCTATCTTGCCACATAATGTTGATAATGATTGGAGTGAAATGCTTCTTAATTGCTCTTGGAAACCATTGGATGTTTCAGCTACAACTAGAATGCTCACAGATCAAACAAAATGCAAAGATTCTGAGTTGGCTGAAGATATCTGCCCACAACATCATTCAGAATGTGATGAGTGTTTCAAAGATGCATGGGATTCTTCTCCAGAGAAGCATGATTATGGGAATAGTTTAAATGAATTCAATCTTTATGAGAAAATTAGCAACAGCGGATTTCCAGTACTTGATAGTTTTCCAGTATCTGACGACTCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCGGTATTTGAGTTACTTATTAAACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAGTTTACAATGGATGAGTTACAGGGTCTTGTTTCTAGATCTCATCTTCTAAAGCATGGTCTGGACCAAACACCATTATGTATTTGCTTTCTAGGCGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCACTCTTGTGGTGTAGGTAGATATTCTGATAGAAGTACTGATCAAATTGAAGATCCAAAGAGTGACAAACAAGTTGCTGATGTAGAAGAGAAAATTGTTCTCAATGGAGATGGGTCACTTCTCCTTCTCCATGAGTGTTTGCTGTCATCTGATATCCCTCATGCCAGTGGTCAGGTTGCAGCCTCAGATCAGATGCCTTCTGCAATTGGCAAGGATGCTGCAAATGAGGTTCTGTCTGATGGTGATCCTTTCCTGTCCTGGGTATATGCAGGTCCCTCTAGTGGGGAACAATTAGCATCATGGGCACAAAGAAAGGAAGAAAAGACACAACGACGAATGGAAATTTTTCAAACGCTTGAGAAAGAATTTTACACTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCATTGCAATCGGTGGAGGATCTCTGCCTTGAAGTGGGCAAGAAGAGGGAAGCTATGACTGAATTTATCCCCAAGAGTTATGAGTCAATCCTGCGGAAACGAAGAGAGGAGCTTATTGAGGCTGAAAATGATGCAATGTATATTGGCAGTAGGTTTGAGTTAGATGCTGTTACTAATATTTTGAAAGAAGCCGAAGCACTGAATGTTAATCAACTTAGATTTGAGGAAACTTCTGGCAGTGTGTCTTCTCAGCTATATGATTTGGAGTCTGGTGAAGATGAAGATTGGAGGGCTAAGGATTATTTGCATCAAGTTGATACTTGCATAGAAGTTGCAATAAAGAGACAGAAGGAACAGCTATCTATCGAGATTAGCAAAATTGATGCACGCATCATGCGAATTGTTACTGGAATGCAAGAGTTGGAACTTAAGCTCGAGCCTGTTTCGGCACATAATTACCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGTCACAAAGAAGTCTGATGCTGCCAGAGAAGCATTTTTAGCTGAACTGGCACTGGATTCAAAAAAGGGTATCAAAAGTGGAAGTGATAATTCAAAACATGCACATGAAAAGCCGAAGGAAAAGAAAAAAAGCAAGGAGTTTAGGAAAGCCAAGGACTCTAAGGTGGTCAATGCTCCTGAGCAGGATGTGCTTCATGATGAGGCTGTTGATGGAGATCCCTGTCAAATTCCATCTGATGGTGATGCGGCGGAGGTGGACATTCCTGTTATTGAAAACTCTGATGCTTTAAGACTACAGGAGGAAGAGATAAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAATTACAAAAGAAATCTGCTCAGACAAATCTAGAGGATAAAGCTGCTCTGGCAGTACATGATAATCTCATTGGACCTGCCCCCAGTGTTGAGGGTGTTGGTGAGCATTTTAAGCCCTCTGTGATGGATCAATTGGCAGAAAGTGAATTGGTTCCTGACTTGTCACCACCGAAGGCTTCTTCAGCAGGTGCATCCAATGTAGCAATTCTAGAGACTAGTCTACCGTCTTCTGATAGGAGGAGGGGAAGGAAAGGTAGACGGCACAAAGCTTCAATCAAACAAGTAGATGGAAATCAGCCTTCACAATCTGAGAAGGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTTAGACATCATGACAATCTCCTAGTAGATAGTGTTAAACCACTTTCTGAAGATTATAGTACAAAGACTTTGAGACAACAACATGCAGCGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGGCAGAGCCTTGATGCATTTCAAGAAAAGCAGAAATTGCCCTTGGTTACAAGTTCTAGGACACCGTTGATCAGTCGTGGTGAAGTAGATAGTAATGATCCTCCATCAAATGAACTCAATGTAGACAATATCTGTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTGTGGCATTTAAGACGGTTTCGAGAAGAGTTTCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTCACTGCCTTGAGCATGGCTTCTGCAGATGCTAGAAGAGAAGCAGTTGCTCCCACTTCTCTAAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTTTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCTGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTCGAGCATTTCTGATGCAGAATCAGTAGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACAGTTGTTTGGTACATTCCATCTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTTGATGAACTTCTTAATGTTGTGGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTCGGTGGTTGTGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAATGCTGATGACATATCCGCAACATTAGCTGCTCTGAATACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAATACACATAATTTGGTATCAGTGGTTTGCTATTATGGTCAGCACTATCATTGTTTTGCTTACAGTCACGACAAGAAATGCTGGATAAAGTATGACGATAGAACTGTTAAGGTAATTGGCAATTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4950 41.96 MAMISTINEGETTPLHSPPNPSCAVLGRFIFFSGNGNLSPLTATGIVTSKTRFLMARKKRNTDPRAKQSPAGPSVSNAAEKSSVSDRASNQNQSRIEPVVIDESDGLSSSTIKLECEKALTAIRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTIFVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEAANDAKEYEEVVQECERALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSLSSWMKNLGNGEEKFRSITIRRVAEDPMEVRMVQARRANEIKKATKTPEERRKEIEVRVAAARLVQQKSETPQMQNEGGKADRTPESSSGPSTRVGERRKHGNVRKLGSSAERKNWVCSFWSSMSTESKKDLLKIKISDLETYFSSLKDASANEVILEALSFYDANKTWKFWVCCKCDKKSVDSESHMHHVVQEHLGNLLPKMQSILPHNVDNDWSEMLLNCSWKPLDVSATTRMLTDQTKCKDSELAEDICPQHHSECDECFKDAWDSSPEKHDYGNSLNEFNLYEKISNSGFPVLDSFPVSDDSERTKLLEKIHAVFELLIKHKYLAASHLNKVIQFTMDELQGLVSRSHLLKHGLDQTPLCICFLGASQLRKILKFLQELSHSCGVGRYSDRSTDQIEDPKSDKQVADVEEKIVLNGDGSLLLLHECLLSSDIPHASGQVAASDQMPSAIGKDAANEVLSDGDPFLSWVYAGPSSGEQLASWAQRKEEKTQRRMEIFQTLEKEFYTLQNLCERKCEHLNYEEALQSVEDLCLEVGKKREAMTEFIPKSYESILRKRREELIEAENDAMYIGSRFELDAVTNILKEAEALNVNQLRFEETSGSVSSQLYDLESGEDEDWRAKDYLHQVDTCIEVAIKRQKEQLSIEISKIDARIMRIVTGMQELELKLEPVSAHNYQSILLPLVNSYLRAHLEDLAEKDVTKKSDAAREAFLAELALDSKKGIKSGSDNSKHAHEKPKEKKKSKEFRKAKDSKVVNAPEQDVLHDEAVDGDPCQIPSDGDAAEVDIPVIENSDALRLQEEEIRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEDKAALAVHDNLIGPAPSVEGVGEHFKPSVMDQLAESELVPDLSPPKASSAGASNVAILETSLPSSDRRRGRKGRRHKASIKQVDGNQPSQSEKDNVAFDNQLNEQVRHHDNLLVDSVKPLSEDYSTKTLRQQHAADDEERFQADLKKAVRQSLDAFQEKQKLPLVTSSRTPLISRGEVDSNDPPSNELNVDNICGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFTALSMASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSISDAESVESNCMGSWDCASDSCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCENADDISATLAALNTEIDISVLYRGLDPKNTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGNWPDVLTMCEKGHLQPQVLFFEAVN 1649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28752032 28761970 + CcPI632755_06g018480.1 Cco06g1848 182448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1848 1649 Pfam Protein of unknown function (DUF629) 389 907 IPR006865 -
Cco06g1848 1649 Gene3D Tetratricopeptide repeat domain 107 251 IPR011990 GO:0005515(InterPro)
Cco06g1848 1649 Coils Coil 1071 1120 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 59 100 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 337 363 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 1160 1213 - -
Cco06g1848 1649 Pfam Ubiquitin carboxyl-terminal hydrolase 1317 1644 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cco06g1848 1649 MobiDBLite consensus disorder prediction 364 378 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 335 378 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 997 1028 - -
Cco06g1848 1649 Coils Coil 166 186 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 996 1028 - -
Cco06g1848 1649 SUPERFAMILY TPR-like 112 229 IPR011990 GO:0005515(InterPro)
Cco06g1848 1649 PANTHER UBIQUITIN SPECIFIC PROTEINASE 55 1647 IPR052398 -
Cco06g1848 1649 Pfam Protein of unknown function (DUF627) 119 228 IPR006866 -
Cco06g1848 1649 SUPERFAMILY Cysteine proteinases 1316 1646 IPR038765 -
Cco06g1848 1649 CDD Peptidase_C19 1408 1646 - -
Cco06g1848 1649 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1316 1648 IPR028889 -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 1167 1181 - -
Cco06g1848 1649 Coils Coil 204 224 - -
Cco06g1848 1649 Gene3D Cysteine proteinases 1304 1649 - -
Cco06g1848 1649 MobiDBLite consensus disorder prediction 67 100 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1848 - - - 0.0