Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1849 ATGGACGGCGCCGCCGCCCACTCTATTGATCGCTCCTCTCACGCAAAATTACATCATGATTCGCCTTCCACGCCGCCGGAAGCGGCGGAAGACTACTATTTCTACACCGATTCCGGACTCTCTGGTGTTCCGCTGACGGAGGCTCCAATTCTCCTGCTTATTAAATTCCACAGAGCACTGCGATCGGAGCTCGCGGATTTACGGCGCGTGACGTTGGCAGCGGTGGAGAGTGGCTGTTACGGCGGCGAGTTTCTGTCGGGATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCTGCCGAGGATGAGGTTGTATTCCCAGCTCTTGATCTACACACAAAAAATGTCATCTCCACATATTCTTTGGAGCATGAGAGCTTGGATGGCCTCTTCACTTCCATTTCTGAACACTGTGAAGAAATCAATGGAGAAAACAAAGATATCTCCAAGCCATTTCAAGAACTGGTTTTCTGTTTGGGCACCCTTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCGTTGCTGATGAAGGAATTCTCGGCAAGAGAACAGGCATCGCTTGTGTGGCAATTCATTTGCAGTGTACCAATGGTACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCAGAGCAGCAATCAGAAGTTGTAAACTGCCTAAAAGGTGTAGTGCCAAAAGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAGCACTGAGAAACCTTGGAGAGATGTAGAAGCAGAAGATATAAAGTTGCATTCATCTCAGGACAATGGAGAGAGCCCTGTTGATGGCCTCCATCTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTACTGAAATGCCTATTTCAAGTCAAGAGTTGCACTTCAACAGCTCTTTCTAACCTTGATTCCTTACTTGTCCAAATAAAGTTTCTGGCTGATGTAATTCTTTTTTACAGAAAGGCATCAGAGAAATTCTTTCGTCCCGTGTTCAATCGACATTCTGATGTCTGCCCAGTCGCCTCTGACCAACCATTTCTTTGTGATGGTCATATTGAAGGCTTGCAGCAGTTGCTGCAGCATGGTGCTCAAGATACTATGCCCTTGAGCAATTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTACGAGTCAGCAAACAGTTCACTTTTCAAGAAACAAAGGTGCTTCCAGTGATTAGAAAGAGCTGCAGCCATAAAACACAGCAACAACTCCTGTATATGAGCCTCCGTACTTTGCCACTTGGGCTCTTGAAGTGTATTATTACTTGGTTTTCAGCTCACTTATCTGAGGAACAACTGAGATCTGTACTTCACACCAAATCGCAGGGAGATTTTCGGGTTAACAATGCACTTGTCGCCCTCTTGCAGAATTGGTTTCGAATTGGCTACTCAGGAAAAACCTCGGTCGAACAATTTGGACAAGATTTGCAGAAAATTTTCAAGACCAGAAGCTATTTTTTGCACAAACAGGTAGAACAAATGAAGGAAGTTGCTGGAACTTCATCCTTGAGCTCAAATTCTCAATCTAATAAGGGGTCAAACTCTGAGGAAATGGGATTACTTTCTACTAACAAGGACAAGAGCTTCATGTCAAATTCTTCATCAAGTGTTTCTTGCACTGCTTCAGTGTATGGAACATCTTACTCCAGTGGAATCAATCTGCAGATACATTTCCCAGGAACAGTGAAGGTACCATGTCCGTATACTAAACATCTTTACGAAGAACGCCCACATTCCACTTTTAATCAGCCAAAACCAATAGATCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCAGCTAAACTGGTTGAACATGTTGGGATCTTGACAGAGTTTCAAAGGCGGTTCCAATTGGTGAAATTTTTATATCAGATCCATACAGATGCTGAGGACCAGATTGCTTTTCCAGCTTTGGAGAAGAAGGGAAAGTTCCAAAACATTAGCTACTCCTACACTATTGACCATAAACTGGAAGTACACCAATTCAGTCAAATTTCCTTCATTCTTAATGAAATGTCTGAATTGCACTCTTCAATTTTTTATGTCAATGCTGATAGGAAAATGTTTAGCCACAGACAGCTCTGTTTGGAACTCCATGATTTGTGCAAATCTTTGCACAAGTCACTTTCTGACCACGTCGATCGTGAAGAAATTGAACTTTGGCCCTTGTTCAGAGAATTCTTCTCGATCGACGAACAAGAAAGACTTATTGGAGCAATATTTGGTAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGAAATACTATGTTCAATGAATGGTTAAGGGAGTGGTGGGAAGGTTATGACCATGAGAAGGTGGCAGCTGAGGTGAAAACTATTACTCCCTCATTGACTTCAGATCCTTTGGAAATCATCTCAAAATATCTATCCAAGGAAGTAACTGATGTATGTGAAGGAAATCTTTTTGGAAAAACCATGAGCTCAACACAGAAGGAACATCAATGTCATGTTACTGATGATGACAAGACAGAAATGTTCAATTTGAATGACGAGACAAAAGATTTTGATGGCAGCCAACATAACGAAACACTTGAAGAATCCCCAAAACTTGTTTCTCATCGGGACGTCGATGGTACCACAGAACATGTGACTGAAACGGAACAACCTGAAAAAGGCAAGAAATCAAGCCAACATGATGACCTTCTTACAATTAGTCAAGAAGATCTGGAGGCTGTAATAAGAAGGGTGTCAAGAGATTCATCCTTAGACTCCAAAAGTAAATCCCACTTGATACAAAATTTGCTAATGAGCCGTTGGATTGCAAAGAACCAAGCCCAATTAGAGACAAACATTACAACAGAAAGCCAAGGATTTGCAGGTCAGTATCCATCTTATAGGGATTCCTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTATTTACATGCATGCATTGTCACGATGAGGCAACCGATCACCCATTGGATAGAAAATCCATCAAAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCAATTAGCAAGACATGTTCAACTCTCTCTTGTGGTAATTTGTCCATGGGAAAATACTTCTGCAAGATCTGCAAACTATTTGACGATTCAAGAGATATCTACCACTGTCCATATTGCAACCTATGCCGAGTCGGGAAGGGATTGGGCATTGATTACTTCCATTGCATGAACTGCAATGCCTGTATGTCTCGTGCACTCTCGGTTCATGTATGCAGAGAGAAATGCCTTGAAGACAACTGCCCTATTTGCCATGAATACATTTTCACTTCCACCCTTCCAGTCAAGTCCCTTCCATGTGGTCATTTGATGCATTCAGCATGCTTTCAGGAATACACCTACACTCATTATACCTGCCCAATCTGTAGCAAGTCGCTCGGAGATATGCAGGTGTACTTTGAGATGTTGGATGCATTATTGGCTGAAGAGAAAATTCCAGAAGAGTATTCTGGAAAAATTCAGGTGATATTGTGTAACGACTGCGAGAAGCGTGGAACGGCACCGTTCCACTGGTCATACCATAAATGTTCATGGTGTGGTTCATATAATACTAGGGTTTTGTAA 3762 41.95 MDGAAAHSIDRSSHAKLHHDSPSTPPEAAEDYYFYTDSGLSGVPLTEAPILLLIKFHRALRSELADLRRVTLAAVESGCYGGEFLSGLIRRVEFLKLAYKYHCAAEDEVVFPALDLHTKNVISTYSLEHESLDGLFTSISEHCEEINGENKDISKPFQELVFCLGTLQTTICQHMIKEEQQVFPLLMKEFSAREQASLVWQFICSVPMVLLEELLPWMMSFLPSEQQSEVVNCLKGVVPKEKLLQEVIMSWLGSTEKPWRDVEAEDIKLHSSQDNGESPVDGLHLWHGAIMKDLKEVLKCLFQVKSCTSTALSNLDSLLVQIKFLADVILFYRKASEKFFRPVFNRHSDVCPVASDQPFLCDGHIEGLQQLLQHGAQDTMPLSNFLEKLCWDMESFVVRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYMSLRTLPLGLLKCIITWFSAHLSEEQLRSVLHTKSQGDFRVNNALVALLQNWFRIGYSGKTSVEQFGQDLQKIFKTRSYFLHKQVEQMKEVAGTSSLSSNSQSNKGSNSEEMGLLSTNKDKSFMSNSSSSVSCTASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSTFNQPKPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILTEFQRRFQLVKFLYQIHTDAEDQIAFPALEKKGKFQNISYSYTIDHKLEVHQFSQISFILNEMSELHSSIFYVNADRKMFSHRQLCLELHDLCKSLHKSLSDHVDREEIELWPLFREFFSIDEQERLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHEKVAAEVKTITPSLTSDPLEIISKYLSKEVTDVCEGNLFGKTMSSTQKEHQCHVTDDDKTEMFNLNDETKDFDGSQHNETLEESPKLVSHRDVDGTTEHVTETEQPEKGKKSSQHDDLLTISQEDLEAVIRRVSRDSSLDSKSKSHLIQNLLMSRWIAKNQAQLETNITTESQGFAGQYPSYRDSLKKEFGCKHYKRNCKLLAPCCNQLFTCMHCHDEATDHPLDRKSIKKMMCMNCLVVQPISKTCSTLSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPEEYSGKIQVILCNDCEKRGTAPFHWSYHKCSWCGSYNTRVL 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28763165 28770657 - CcPI632755_06g018490.1 Cco06g1849 182449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1849 1253 CDD Hr-like 52 184 - -
Cco06g1849 1253 SUPERFAMILY Zinc hairpin stack 1084 1138 IPR037275 -
Cco06g1849 1253 Pfam Ring finger domain 1145 1188 IPR001841 -
Cco06g1849 1253 MobiDBLite consensus disorder prediction 7 24 - -
Cco06g1849 1253 MobiDBLite consensus disorder prediction 521 541 - -
Cco06g1849 1253 FunFam Zinc finger protein-related isoform 1 1142 1191 - -
Cco06g1849 1253 Pfam CHY zinc finger 1018 1086 IPR008913 GO:0008270(InterPro)
Cco06g1849 1253 MobiDBLite consensus disorder prediction 893 944 - -
Cco06g1849 1253 SMART ring_2 1147 1188 IPR001841 -
Cco06g1849 1253 MobiDBLite consensus disorder prediction 1 24 - -
Cco06g1849 1253 CDD Hr-like 611 754 - -
Cco06g1849 1253 Gene3D nmb1532 protein domain like 52 204 - -
Cco06g1849 1253 Gene3D nmb1532 protein domain like 604 775 - -
Cco06g1849 1253 CDD RING-H2_Pirh2-like 1146 1189 - -
Cco06g1849 1253 Pfam Hemerythrin HHE cation binding domain 52 186 IPR012312 -
Cco06g1849 1253 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 643 1252 - -
Cco06g1849 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1140 1191 IPR013083 -
Cco06g1849 1253 Pfam Zinc-ribbon 1194 1251 IPR039512 -
Cco06g1849 1253 ProSiteProfiles Zinc finger RING-type profile. 1147 1189 IPR001841 -
Cco06g1849 1253 SUPERFAMILY RING/U-box 1134 1193 - -
Cco06g1849 1253 ProSiteProfiles Zinc finger CHY-type profile. 1011 1080 IPR008913 GO:0008270(InterPro)
Cco06g1849 1253 ProSiteProfiles Zinc finger CTCHY-type profile. 1083 1146 IPR017921 -
Cco06g1849 1253 Gene3D - 1218 1253 - -
Cco06g1849 1253 SUPERFAMILY CHY zinc finger-like 1009 1074 IPR037274 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1849 K16276 - - csv:101212459 2274.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1665 Cco-Chr6:27234205 Cco06g1849 Cco-Chr6:28763165 3.60E-224 dispersed
Cco06g1849 Cco-Chr6:28763165 Cco09g0605 Cco-Chr9:5332080 5.30E-47 dispersed
Cco06g1849 Cco-Chr6:28763165 Cco04g1149 Cco-Chr4:26846909 2.00E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34