Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1852 ATGGAAGCTCCTCCGATTCCGAGCAACAGATGGATGGCTACCGTTGCCAGCATTTGGATCCAGTGCATCTGCGGTCCATCCTACACCTTCAGCATCTACTCCGCCGCCCTCAAATCCACTCAAAACTACGATCAATCCACTCTCGACACTGTTTCCGTCGTCAAAGACATCGGCGCCACCGCCGGGGTTCTCTCCGGCCTCCTCTACTCCGCCGTCGTCTCCACAGACCACCCGCGTCGCCCATGGATCGTCCTCGCCGTCGGAGCTATTCAATGTTTCCTTGGATACATTTTCATGTGGGCCGCCGTCTCCGGCTTAATCCCTCGACCGCCGGTGCCGACAATGTGTCTGTTCATGTTCTTAGCTGTCCATGCCCAAGTTTTCTTTAACACGGCTAATGTTGTCACTGGCGTTCATAATTTCCAGCTCTACAGCGGCACCGTTGTCGGCATTCTAAAGGGATTTTTGGGTCTTAGTGCAGCAGTACTGATCCAATTCTCCAACGCATTCTTCAACGGAGACCCTGTAAATTATCTTTTGATGCTGGCGATTTTGCCGGCGCTTACGACTCTGTTGCTCATGAGATTCGTCGTAATCGACAATAAAACAGAGACGGGAAATGAATTGACCCATTTGAATTCCCTCTCGACAATTGCTCTAACAATCTGCGGATATCTCACGATTCTAATCATTTTAGACAACGTTCTCAATCTACCGACATGGGTTCGCATCTTCACCTTCATTCTCCTCCTCGCCTTTCTTGTTTCCCCTGTCGGAATCGCAATCAGAGCAAAAACAGAAGACTCTGTTTTCAAAACGAAGCTTCAAATTACCGAGAATCCCGTTGAATATCATCGCATTCCCAGCGAGGAGAAGATCAATGATGAGATGGTGATTGTTAAAGACGGAGAAATGAATATAATCGAGGCAATTGGCACAATGAATTTCTGGCTATTGTTTTTCGCGATGATGTGCGGAATGGGTTCTGGGTTAGCCACCATAAACAACATGAACCAACTGTGCCAGTCCTTGGGATTCAGAACAGTCGAAATCAATACATTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGGCGTTTGGGATCTGGCTATGCATCTGATCTTCTCTCTGGAAATTAG 1140 47.81 MEAPPIPSNRWMATVASIWIQCICGPSYTFSIYSAALKSTQNYDQSTLDTVSVVKDIGATAGVLSGLLYSAVVSTDHPRRPWIVLAVGAIQCFLGYIFMWAAVSGLIPRPPVPTMCLFMFLAVHAQVFFNTANVVTGVHNFQLYSGTVVGILKGFLGLSAAVLIQFSNAFFNGDPVNYLLMLAILPALTTLLLMRFVVIDNKTETGNELTHLNSLSTIALTICGYLTILIILDNVLNLPTWVRIFTFILLLAFLVSPVGIAIRAKTEDSVFKTKLQITENPVEYHRIPSEEKINDEMVIVKDGEMNIIEAIGTMNFWLLFFAMMCGMGSGLATINNMNQLCQSLGFRTVEINTFVSLWSIWNFLGRLGSGYASDLLSGN 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28791221 28792443 + CcPI632755_06g018520.1 Cco06g1852 182452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1852 379 Pfam Nodulin-like 10 261 IPR010658 -
Cco06g1852 379 SUPERFAMILY MFS general substrate transporter 9 201 IPR036259 -
Cco06g1852 379 SUPERFAMILY MFS general substrate transporter 222 376 IPR036259 -
Cco06g1852 379 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 376 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1852 Cco-Chr6:28791221 Cco06g1854 Cco-Chr6:28796046 2.60E-106 dispersed
Cco06g1851 Cco-Chr6:28785481 Cco06g1852 Cco-Chr6:28791221 2.30E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1852 - - - 0.0