Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1854 ATGGAATTGAAATCGGAGACTTCCAGTTTTAGCAACAAATGGGTATCAACAGTTGCTAGCGTATGGATTCAATGCACTAGCGGATCTCTTTACACTTTCTCCATATACTCCCAAACCCTCAAATCAACTCAGGGATACGATCAATCCACTTTGGATATTGTTTCTGTTTTCAAAGACATCGGTGTCAATTGTGGCGTCCTTGCGGGCTTTCTCTATTACTGTGCCACCGCTGATGGTCGTCGTCCTGGGCCGTGGATTGTTCACTTGGCCGGTGCAATTCAGTGCTTCTTGGGGTATTTCTTTATCTGGGCTGCCGTTTCTGGGGTCTTTCCTCGGCCGCCGGTTCCCGTTATGTGCCTTTTCATGTTGGTGGCTGCTCATGCTCAGAGTTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGGGCAACCTACTTCGTTTCTTCTGATGTTGGCGCTGCTTCCAACCCTTAATTCCTTATTGTGTATGTGGTTCGTGAGAATCCACCATGCAGATAATGGGATTGAAAAAGAGCATCTGAATACCCTATCCATAATTACTCTGCTCGTTGCTACTTACCTTATGATCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCTTTACATGTTGCTACATTTGTTCTACTTTTGATGTTGCTTGCATCTCCTCTATATATTGCAATTAGAGCCCAACAGAGAGAGTCCAGAAGGATTTTGCACCCTTCTTTTACTGAGAGTGACCGGCTGATTGGTCGCTCCAATCAAGAGACTTCGGATTTTGACTATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTGTACACAATAGACTTCTGGATATTGTTTTTTGCGACTGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTCGGTTACACAAGCTTGGAGATAAATACTTTGGTTTCGTTGTGGAGTATTTGGAACTTTTTTGGTCGTTTTGGAGCTGGGTATGTGTCAGATTATTTTCTGCATGTCAAAGGATGGGCTAGGCCGTTGTTCATGTTCATCACTCTGACAACCATGAGCATTGGACATGTAGTGATTGCTTCTGGCCTGCCTGGTGCTCTTTTTGCTGGTTCGGTAGTAGTGGGTGTTTGTTATGGGTCTCAGTGGTCACTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTGCACATGGGTACTATATTCAATGCCGTAACAGTAGCAAGCCCTGTTGGATCTTATTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAGGAAGCATCAGAAGGCTGCAACACTCATGAAATGTGGAGGTTTTTCCTGGTTGCTGCTAGTAAGGTAGTTCAGTTCTTTTGTGCGGAGTAG 1509 43.34 MELKSETSSFSNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYCATADGRRPGPWIVHLAGAIQCFLGYFFIWAAVSGVFPRPPVPVMCLFMLVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNGQPTSFLLMLALLPTLNSLLCMWFVRIHHADNGIEKEHLNTLSIITLLVATYLMIKIVLEHIFTFQFPLHVATFVLLLMLLASPLYIAIRAQQRESRRILHPSFTESDRLIGRSNQETSDFDYERRRESEESLNLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINTLVSLWSIWNFFGRFGAGYVSDYFLHVKGWARPLFMFITLTTMSIGHVVIASGLPGALFAGSVVVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAVTVASPVGSYLFSVRVVGYIYDKEASEGCNTHEMWRFFLVAASKVVQFFCAE 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28796046 28800384 + CcPI632755_06g018540.1 Cco06g1854 182454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1854 502 Pfam Nodulin-like 13 264 IPR010658 -
Cco06g1854 502 SUPERFAMILY MFS general substrate transporter 219 474 IPR036259 -
Cco06g1854 502 Gene3D MFS general substrate transporter like domains 214 500 IPR036259 -
Cco06g1854 502 SUPERFAMILY MFS general substrate transporter 9 204 IPR036259 -
Cco06g1854 502 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 490 - GO:0016020(PANTHER)
Cco06g1854 502 ProSiteProfiles Major facilitator superfamily (MFS) profile. 317 502 IPR020846 GO:0022857(InterPro)
Cco06g1854 502 CDD MFS_Mch1p_like 13 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1851 Cco-Chr6:28785481 Cco06g1854 Cco-Chr6:28796046 2.00E-163 dispersed
Cco06g1852 Cco-Chr6:28791221 Cco06g1854 Cco-Chr6:28796046 2.60E-106 dispersed
Cco06g1854 Cco-Chr6:28796046 Cco10g1983 Cco-Chr10:33350382 1.40E-83 dispersed
Cco06g1853 Cco-Chr6:28792485 Cco06g1854 Cco-Chr6:28796046 4.30E-32 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1854 - - - 0.0