Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1859 ATGTCCAAGATCATATGCGCAAAGCAAAGGAATCCATTTCTCTTGGACCCCAATCCCTTCCCTTCCTTTCCCACAAGCTACTTCATAAATAACTTCTCCACTACAAATTCCGAATCTCCATCTTCAAATACATACACCAAATCTCTTCCATTTCTCTCTGGTACTCCGACATTGACATCTGATTTTGATCCCTTGCGAATTACTGCTTCTGGGTCATTTGGGTCAGCGGATATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAGGGTGGGAGCGCATTGGGGCTTCGAATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAACTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG 1059 43.63 MSKIICAKQRNPFLLDPNPFPSFPTSYFINNFSTTNSESPSSNTYTKSLPFLSGTPTLTSDFDPLRITASGSFGSADMDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28832593 28836100 + CcPI632755_06g018590.1 Cco06g1859 182459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1859 352 CDD bHLH_AtBPE_like 220 302 - -
Cco06g1859 352 SMART finulus 236 286 IPR011598 GO:0046983(InterPro)
Cco06g1859 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 130 307 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco06g1859 352 MobiDBLite consensus disorder prediction 146 161 - -
Cco06g1859 352 Gene3D - 227 301 IPR036638 GO:0046983(InterPro)
Cco06g1859 352 MobiDBLite consensus disorder prediction 182 221 - -
Cco06g1859 352 Coils Coil 277 297 - -
Cco06g1859 352 MobiDBLite consensus disorder prediction 126 145 - -
Cco06g1859 352 MobiDBLite consensus disorder prediction 162 181 - -
Cco06g1859 352 Pfam Helix-loop-helix DNA-binding domain 234 281 IPR011598 GO:0046983(InterPro)
Cco06g1859 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983(InterPro)
Cco06g1859 352 MobiDBLite consensus disorder prediction 126 221 - -
Cco06g1859 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 300 IPR036638 GO:0046983(InterPro)
Cco06g1859 352 FunFam Basic helix-loop-helix transcription factor 227 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1859 Cco-Chr6:28832593 Cco09g0834 Cco-Chr9:7790126 3.10E-37 dispersed
Cco06g1859 Cco-Chr6:28832593 Cco08g1056 Cco-Chr8:22363287 3.80E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59555 PF00010 HLH 3.20E-08 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1859 - - - 0.0