Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1864 | ATGAGTCCGATTCTGAAGCTTTTCAACCTCAACTCTTCATCATCAATTTTCATTCTCCAATTTTTAACGCCCGCCCAGAAGAAATTCACGGCTGGCTTTGATAATTTTATCCATCTTGTTCAAGTTTTCAAGGGTTTCATTCCTCGATTGGATTCTCGAGCAACAATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCGTCGTCTCCTTCTTCTTCTCCTCCTTCATCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAGGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAAAGGGTGGGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGAGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTGCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGGAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACAGCAAATTTCGATCATTGTTGGACAGCAATGCCCCCAGACGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG | 1617 | 45.02 | MSPILKLFNLNSSSSIFILQFLTPAQKKFTAGFDNFIHLVQVFKGFIPRLDSRATMVSASTRQKNMHSLLVANLTKLTIPSSSSPSSSPPSSAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVGETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKENCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG | 538 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28871758 | 28874363 | + | CcPI632755_06g018640.1 | Cco06g1864 | 182464 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1864 | 538 | SMART | pkinase_C_6 | 470 | 529 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 332 | 344 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 167 | 531 | - | - | |
Cco06g1864 | 538 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
Cco06g1864 | 538 | Gene3D | Phosphorylase Kinase; domain 1 | 204 | 511 | - | - | |
Cco06g1864 | 538 | ProSiteProfiles | Protein kinase domain profile. | 205 | 469 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | SMART | serkin_6 | 205 | 469 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | FunFam | Non-specific serine/threonine protein kinase | 293 | 488 | - | - | |
Cco06g1864 | 538 | Pfam | Protein kinase C terminal domain | 490 | 527 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | MobiDBLite | consensus disorder prediction | 156 | 185 | - | - | |
Cco06g1864 | 538 | Pfam | Protein kinase domain | 207 | 469 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 470 | 537 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1864 | 538 | SUPERFAMILY | Protein kinase-like (PK-like) | 202 | 532 | IPR011009 | - | |
Cco06g1864 | 538 | ProSitePatterns | Protein kinases ATP-binding region signature. | 211 | 242 | IPR017441 | GO:0005524(InterPro) | |
Cco06g1864 | 538 | FunFam | Non-specific serine/threonine protein kinase | 202 | 316 | - | - | |
Cco06g1864 | 538 | Gene3D | Transferase(Phosphotransferase) domain 1 | 293 | 488 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2410 | Cco-Chr5:32603419 | Cco06g1864 | Cco-Chr6:28871758 | 2.00E-54 | dispersed | |
Cco06g1864 | Cco-Chr6:28871758 | Cco08g1780 | Cco-Chr8:28918367 | 4.60E-56 | dispersed | |
Cco11g1488 | Cco-Chr11:27708078 | Cco06g1864 | Cco-Chr6:28871758 | 8.50E-30 | dispersed | |
Cco06g1864 | Cco-Chr6:28871758 | Cco02g0328 | Cco-Chr2:2989299 | 3.00E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86946 | PF00069 | Pkinase | 4.20E-72 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1864 | K04688 | - | csv:101214867 | 884.789 |