Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1864 ATGAGTCCGATTCTGAAGCTTTTCAACCTCAACTCTTCATCATCAATTTTCATTCTCCAATTTTTAACGCCCGCCCAGAAGAAATTCACGGCTGGCTTTGATAATTTTATCCATCTTGTTCAAGTTTTCAAGGGTTTCATTCCTCGATTGGATTCTCGAGCAACAATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCGTCGTCTCCTTCTTCTTCTCCTCCTTCATCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAGGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAAAGGGTGGGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGAGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTGCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGGAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACAGCAAATTTCGATCATTGTTGGACAGCAATGCCCCCAGACGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1617 45.02 MSPILKLFNLNSSSSIFILQFLTPAQKKFTAGFDNFIHLVQVFKGFIPRLDSRATMVSASTRQKNMHSLLVANLTKLTIPSSSSPSSSPPSSAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVGETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKENCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28871758 28874363 + CcPI632755_06g018640.1 Cco06g1864 182464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1864 538 SMART pkinase_C_6 470 529 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 PANTHER RIBOSOMAL PROTEIN S6 KINASE 167 531 - -
Cco06g1864 538 MobiDBLite consensus disorder prediction 171 185 - -
Cco06g1864 538 Gene3D Phosphorylase Kinase; domain 1 204 511 - -
Cco06g1864 538 ProSiteProfiles Protein kinase domain profile. 205 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 SMART serkin_6 205 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 FunFam Non-specific serine/threonine protein kinase 293 488 - -
Cco06g1864 538 Pfam Protein kinase C terminal domain 490 527 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 MobiDBLite consensus disorder prediction 156 185 - -
Cco06g1864 538 Pfam Protein kinase domain 207 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 ProSiteProfiles AGC-kinase C-terminal domain profile. 470 537 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1864 538 SUPERFAMILY Protein kinase-like (PK-like) 202 532 IPR011009 -
Cco06g1864 538 ProSitePatterns Protein kinases ATP-binding region signature. 211 242 IPR017441 GO:0005524(InterPro)
Cco06g1864 538 FunFam Non-specific serine/threonine protein kinase 202 316 - -
Cco06g1864 538 Gene3D Transferase(Phosphotransferase) domain 1 293 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2410 Cco-Chr5:32603419 Cco06g1864 Cco-Chr6:28871758 2.00E-54 dispersed
Cco06g1864 Cco-Chr6:28871758 Cco08g1780 Cco-Chr8:28918367 4.60E-56 dispersed
Cco11g1488 Cco-Chr11:27708078 Cco06g1864 Cco-Chr6:28871758 8.50E-30 dispersed
Cco06g1864 Cco-Chr6:28871758 Cco02g0328 Cco-Chr2:2989299 3.00E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86946 PF00069 Pkinase 4.20E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1864 K04688 - csv:101214867 884.789