Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1865 ATGCGGAGTACCACTGCCGCTGTCAACGAATCCGCCGCCGCCGAGACCGGTGGCGGTAGTCCAGGTGAGATCATGCTGTTTGGTGTCAGAGTGGTGGTGGATTCGATGAGGAAGAGCGTGAGTTTGAACAATCTGTCGCAGTATGAGCAACCTCACGACGCCGCCGATGTAATAGCAAACAACAACAAGAACGACCTCGTTTCCGTCAATAACAAAGACGATGTTGCCGCTGGTTATGCCTCTGCGGATGATGCTGTTCCAAACGCCCGAGGGAACCGCGAACGTGAGCGCAAGCGAGGTGTGCCTTGGACTGAGGAAGAACACAAGCTGTTTTTAATTGGACTACAACAAGTAGGGAAGGGGGATTGGAGAGGAATTTCTAGAAACTTTGTTAAGACTCGCACCCCAACTCAGGTCGCTAGCCACGCTCAGAAGTACTTTCTTCGCCGGAGCAATCTAAATCGTCGTCGCCGTAGATCTAGTCTTTTCGATATCACGACGGACACGGTCACGGCTGCTCCAATGGTTGAAGAGCCGGTCCAGCGTCAAGAAATTCCCTCTCAATCCCATTCCTTTACTCCATCAACCTTACCTGAAATTTCTAAAAACAACGTAATCCCAATAATTCAAACTTTGCCACTTTCGTTTGGGCCAACACCATTAGCCACTCCAACCAAGAATCTAATGGAAAAGTGTGGTCCTAGAGAAGTAAACACAGAAAATGATGGATCACTAAAGCTCGGCCTCGCGGATTCCATCTTTTCCTCTAATCAAATTCCAACCTCAACTCGTTTGAACACAAATTCAACCTCAGCAATGGAATCATTATCATCATCATCATCATCAGCTTTATCTCTTCGCCTTTCCTTAACATCTGACCAGAGAGATGCTTCATCAAGACATTCTACTTTCCAATCCATTCCAAGTTTCAATAGTGGTGATGCCATCATAAGTGCTGCTTAA 963 47.14 MRSTTAAVNESAAAETGGGSPGEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHDAADVIANNNKNDLVSVNNKDDVAAGYASADDAVPNARGNRERERKRGVPWTEEEHKLFLIGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVTAAPMVEEPVQRQEIPSQSHSFTPSTLPEISKNNVIPIIQTLPLSFGPTPLATPTKNLMEKCGPREVNTENDGSLKLGLADSIFSSNQIPTSTRLNTNSTSAMESLSSSSSSALSLRLSLTSDQRDASSRHSTFQSIPSFNSGDAIISAA 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28876501 28878134 - CcPI632755_06g018650.1 Cco06g1865 182465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1865 320 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Cco06g1865 320 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Cco06g1865 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Cco06g1865 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677(InterPro)
Cco06g1865 320 FunFam transcription factor MYB1R1 101 152 - -
Cco06g1865 320 Gene3D - 101 153 - -
Cco06g1865 320 SMART sant 99 149 IPR001005 -
Cco06g1865 320 PANTHER TRANSCRIPTION FACTOR KUA1 10 263 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Cco06g1865 320 CDD SANT 102 147 IPR001005 -
Cco06g1865 320 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Cco06g1865 320 MobiDBLite consensus disorder prediction 82 101 - -
Cco06g1865 320 Pfam Myb-like DNA-binding domain 101 147 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1865 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1865 Cco-Chr6:28876501 Cco09g0017 Cco-Chr9:133103 8.30E-37 dispersed
Cco10g0251 Cco-Chr10:2693968 Cco06g1865 Cco-Chr6:28876501 6.60E-37 transposed
Cco01g1426 Cco-Chr1:26021592 Cco06g1865 Cco-Chr6:28876501 8.20E-58 wgd
Cco05g2752 Cco-Chr5:35373573 Cco06g1865 Cco-Chr6:28876501 1.30E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59556 PF00249 Myb_DNA-binding 1.40E-10 CL0123 Cco TF