Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1869 ATGGCGACGGTTCCTGACCGCTCCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGACGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTGGTCGATCGGAAGGTTATTGAGCGATTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTCAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTTAAAGAGGAAGCTAGATCTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCACGGATTTCTGCAACGATCAGCACCGTCATTTCGACGTTCATCAAAGAAACCTAGGTTCCTCAATGGCAACTAA 684 45.18 MATVPDRSRRNPIDRLVGISDDSKQSCSSTTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGLKRKLDLDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRRSSKKPRFLNGN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28929583 28930741 - CcPI632755_06g018690.1 Cco06g1869 182469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1869 227 CDD REC_typeA_ARR 35 157 - -
Cco06g1869 227 SUPERFAMILY CheY-like 32 157 IPR011006 -
Cco06g1869 227 Gene3D - 32 191 - -
Cco06g1869 227 Pfam Response regulator receiver domain 35 154 IPR001789 GO:0000160(InterPro)
Cco06g1869 227 ProSiteProfiles Response regulatory domain profile. 34 162 IPR001789 GO:0000160(InterPro)
Cco06g1869 227 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 188 IPR045279 GO:0009736(InterPro)
Cco06g1869 227 SMART REC_2 33 158 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1869 K14492 - - csv:101214143 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1869 Cco-Chr6:28929583 Cco10g1598 Cco-Chr10:29261022 6.30E-39 dispersed
Cco04g0576 Cco-Chr4:18812233 Cco06g1869 Cco-Chr6:28929583 1.60E-41 transposed
Cco05g2946 Cco-Chr5:36923275 Cco06g1869 Cco-Chr6:28929583 5.00E-42 transposed
Cco07g0539 Cco-Chr7:6919100 Cco06g1869 Cco-Chr6:28929583 1.90E-39 transposed
Cco08g0714 Cco-Chr8:18714733 Cco06g1869 Cco-Chr6:28929583 2.10E-34 transposed
Cco05g2760 Cco-Chr5:35446651 Cco06g1869 Cco-Chr6:28929583 2.70E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1918 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cco11g0371 . 59 306 Response Regulator Gene Family AT3G16857 53.2 8.0e-52 202.2
Cco11g0371 . 13 340 Response Regulator Gene Family AT4G31920 51.2 1.4e-79 294.3
Cco06g0479 . 45 300 Response Regulator Gene Family AT4G31920 54.3 5.2e-71 265.8
Cco05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.8e-70 261.5
Cco08g1918 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cco05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cco05g1878 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.0e-40 163.3
Cco06g1405 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.2e-102 368.6
Cco11g0371 . 15 359 Response Regulator Gene Family AT2G25180 54.6 9.0e-85 311.6
Cco05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cco08g1918 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.0e-69 258.5
Cco06g0479 . 108 341 Response Regulator Gene Family AT2G01760 50.6 5.7e-54 208.4
Cco06g1405 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.2e-49 191.4
Cco08g1918 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.6e-48 189.1
Cco08g1918 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.7e-62 235.7
Cco06g0479 . 46 271 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cco05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.7e-79 293.1
Cco05g1878 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cco08g1918 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.4e-59 225.3
Cco06g1405 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.8e-57 218.8
Cco11g0371 . 18 266 Response Regulator Gene Family AT4G16110 51.3 8.5e-52 202.2
Cco06g1869 . 16 178 Response Regulator Gene Family AT3G48100 68.9 9.6e-54 206.8
Cco05g2760 . 41 174 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cco01g0785 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cco04g0576 . 10 156 Response Regulator Gene Family AT3G48100 57.1 3.6e-40 161.8
Cco05g2946 . 4 167 Response Regulator Gene Family AT3G48100 54.3 7.9e-40 160.6
Cco10g1598 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cco07g0539 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.2e-37 150.6
Cco05g2760 . 30 213 Response Regulator Gene Family AT1G59940 63.6 6.8e-55 211.5
Cco06g1869 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.3e-47 185.3
Cco01g0785 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.8e-40 162.9
Cco10g1598 . 8 154 Response Regulator Gene Family AT1G59940 57.1 1.1e-39 161.0
Cco05g2946 . 11 153 Response Regulator Gene Family AT1G59940 60.1 1.4e-39 160.6
Cco04g0576 . 11 154 Response Regulator Gene Family AT1G59940 55.6 4.5e-38 155.6
Cco07g0539 . 16 151 Response Regulator Gene Family AT1G59940 60.3 4.5e-38 155.6
Cco05g2760 . 40 197 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Cco06g1869 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.6e-46 182.6
Cco10g1598 . 10 162 Response Regulator Gene Family AT1G10470 55.6 1.1e-39 160.6
Cco01g0785 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.4e-39 160.2
Cco05g2946 . 11 175 Response Regulator Gene Family AT1G10470 52.7 2.0e-38 156.4
Cco04g0576 . 17 154 Response Regulator Gene Family AT1G10470 59.4 4.4e-38 155.2
Cco07g0539 . 21 151 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cco06g1869 . 16 178 Response Regulator Gene Family AT3G48100 68.9 9.6e-54 206.8
Cco05g2760 . 41 174 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cco01g0785 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cco04g0576 . 10 156 Response Regulator Gene Family AT3G48100 57.1 3.6e-40 161.8
Cco05g2946 . 4 167 Response Regulator Gene Family AT3G48100 54.3 7.9e-40 160.6
Cco10g1598 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cco07g0539 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.2e-37 150.6
Cco06g1869 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.0e-50 196.8
Cco05g2760 . 23 187 Response Regulator Gene Family AT5G62920 62.4 5.5e-49 191.0
Cco01g0785 . 11 151 Response Regulator Gene Family AT5G62920 60.3 3.6e-40 161.8
Cco04g0576 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.8e-39 159.5
Cco10g1598 . 10 156 Response Regulator Gene Family AT5G62920 55.1 6.8e-39 157.5
Cco05g2946 . 11 170 Response Regulator Gene Family AT5G62920 52.8 7.5e-38 154.1
Cco06g1869 . 29 171 Response Regulator Gene Family AT1G19050 73.4 3.8e-51 198.4
Cco05g2760 . 35 197 Response Regulator Gene Family AT1G19050 58.5 5.4e-45 177.9
Cco05g2946 . 8 158 Response Regulator Gene Family AT1G19050 55.0 7.5e-39 157.5
Cco04g0576 . 11 156 Response Regulator Gene Family AT1G19050 54.8 4.9e-38 154.8
Cco10g1598 . 8 156 Response Regulator Gene Family AT1G19050 53.0 8.3e-38 154.1
Cco01g0785 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cco07g0539 . 21 152 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Cco04g0576 . 8 264 Response Regulator Gene Family AT2G41310 54.5 8.4e-60 227.3
Cco10g1598 . 1 157 Response Regulator Gene Family AT2G41310 71.3 1.4e-54 209.9
Cco01g0785 . 1 153 Response Regulator Gene Family AT2G41310 64.9 3.9e-49 191.8
Cco08g0714 . 7 158 Response Regulator Gene Family AT2G41310 58.4 4.6e-42 168.3
Cco05g2760 . 37 170 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cco06g1869 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cco07g0539 . 15 152 Response Regulator Gene Family AT2G41310 55.6 5.7e-40 161.4
Cco04g0576 . 8 264 Response Regulator Gene Family AT3G57040 53.5 3.8e-63 238.4
Cco10g1598 . 1 157 Response Regulator Gene Family AT3G57040 74.5 1.2e-56 216.9
Cco01g0785 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.7e-50 196.4
Cco05g2946 . 4 157 Response Regulator Gene Family AT3G57040 65.4 2.4e-49 192.6
Cco05g2760 . 37 170 Response Regulator Gene Family AT3G57040 59.4 2.0e-43 172.9
Cco08g0714 . 11 174 Response Regulator Gene Family AT3G57040 55.8 7.4e-43 171.0
Cco06g1869 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cco07g0539 . 18 152 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cco06g1869 . 26 177 Response Regulator Gene Family AT1G74890 71.8 3.5e-52 201.8
Cco05g2760 . 37 199 Response Regulator Gene Family AT1G74890 61.2 4.4e-47 184.9
Cco05g2946 . 5 158 Response Regulator Gene Family AT1G74890 57.1 5.2e-40 161.4
Cco04g0576 . 12 172 Response Regulator Gene Family AT1G74890 52.1 1.5e-39 159.8
Cco01g0785 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Cco10g1598 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.2e-38 156.0
Cco07g0539 . 21 148 Response Regulator Gene Family AT1G74890 60.2 5.4e-37 151.4
Cco07g0539 . 21 153 Response Regulator Gene Family AT2G40670 70.1 2.1e-47 185.7
Cco05g2760 . 38 171 Response Regulator Gene Family AT2G40670 56.9 3.2e-40 161.8
Cco10g1598 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.1e-40 160.6
Cco06g1869 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.0e-38 155.2
Cco07g0539 . 21 153 Response Regulator Gene Family AT3G56380 70.9 8.6e-48 186.8
Cco05g2760 . 35 171 Response Regulator Gene Family AT3G56380 52.9 3.0e-40 161.8
Cco06g1869 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.1e-40 161.0
Cco10g1598 . 6 156 Response Regulator Gene Family AT3G56380 52.6 9.6e-39 156.8
Cco01g0785 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cco05g2946 . 3 148 Response Regulator Gene Family AT3G56380 55.8 4.0e-37 151.4
Cco08g1918 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cco11g0371 . 59 306 Response Regulator Gene Family AT3G16857 53.2 8.0e-52 202.2
Cco06g0479 . 46 271 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cco05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.7e-79 293.1
Cco05g1878 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cco08g1918 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.4e-59 225.3
Cco06g1405 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.8e-57 218.8
Cco11g0371 . 18 266 Response Regulator Gene Family AT4G16110 51.3 8.5e-52 202.2
Cco11g0371 . 13 340 Response Regulator Gene Family AT4G31920 51.2 1.4e-79 294.3
Cco06g0479 . 45 300 Response Regulator Gene Family AT4G31920 54.3 5.2e-71 265.8
Cco05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.8e-70 261.5
Cco08g1918 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cco05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cco05g1878 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.0e-40 163.3
Cco06g1405 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.2e-102 368.6
Cco11g0371 . 15 359 Response Regulator Gene Family AT2G25180 54.6 9.0e-85 311.6
Cco05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cco08g1918 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.0e-69 258.5
Cco06g0479 . 108 341 Response Regulator Gene Family AT2G01760 50.6 5.7e-54 208.4
Cco06g1405 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.2e-49 191.4
Cco08g1918 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.6e-48 189.1
Cco08g1918 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.7e-62 235.7
Cco01g1797 . 70 615 Response Regulator Gene Family AT5G61380 50.3 2.7e-140 496.1
Cco04g1069 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.3e-54 209.5
Cco01g0009 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
Cco04g1069 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.5e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012253 2 1 2 2 2 0 1 1 0 0 0 0 1 1 1 1 0 2 1 1 0 1 1 1 1 0 1 3 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59557 PF00072 Response_reg 9.80E-21 CL0304 Cco TR