Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1869 | ATGGCGACGGTTCCTGACCGCTCCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGACGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTGGTCGATCGGAAGGTTATTGAGCGATTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTCAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTTAAAGAGGAAGCTAGATCTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCACGGATTTCTGCAACGATCAGCACCGTCATTTCGACGTTCATCAAAGAAACCTAGGTTCCTCAATGGCAACTAA | 684 | 45.18 | MATVPDRSRRNPIDRLVGISDDSKQSCSSTTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGLKRKLDLDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRRSSKKPRFLNGN | 227 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 28929583 | 28930741 | - | CcPI632755_06g018690.1 | Cco06g1869 | 182469 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1869 | 227 | CDD | REC_typeA_ARR | 35 | 157 | - | - | |
| Cco06g1869 | 227 | SUPERFAMILY | CheY-like | 32 | 157 | IPR011006 | - | |
| Cco06g1869 | 227 | Gene3D | - | 32 | 191 | - | - | |
| Cco06g1869 | 227 | Pfam | Response regulator receiver domain | 35 | 154 | IPR001789 | GO:0000160(InterPro) | |
| Cco06g1869 | 227 | ProSiteProfiles | Response regulatory domain profile. | 34 | 162 | IPR001789 | GO:0000160(InterPro) | |
| Cco06g1869 | 227 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 30 | 188 | IPR045279 | GO:0009736(InterPro) | |
| Cco06g1869 | 227 | SMART | REC_2 | 33 | 158 | IPR001789 | GO:0000160(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1869 | Cco-Chr6:28929583 | Cco10g1598 | Cco-Chr10:29261022 | 6.30E-39 | dispersed | |
| Cco04g0576 | Cco-Chr4:18812233 | Cco06g1869 | Cco-Chr6:28929583 | 1.60E-41 | transposed | |
| Cco05g2946 | Cco-Chr5:36923275 | Cco06g1869 | Cco-Chr6:28929583 | 5.00E-42 | transposed | |
| Cco07g0539 | Cco-Chr7:6919100 | Cco06g1869 | Cco-Chr6:28929583 | 1.90E-39 | transposed | |
| Cco08g0714 | Cco-Chr8:18714733 | Cco06g1869 | Cco-Chr6:28929583 | 2.10E-34 | transposed | |
| Cco05g2760 | Cco-Chr5:35446651 | Cco06g1869 | Cco-Chr6:28929583 | 2.70E-48 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59557 | PF00072 | Response_reg | 9.80E-21 | CL0304 | Cco | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1869 | K14492 | - | csv:101214143 | 323.553 |