Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1872 ATGGCGATTCCCATTCCCAGCCGACAGCTGTTCATCGACGGCGAGTGGAGGGAACCAGTCCTCAAGAAGCGCATCCCCATCAGCAACCCCACTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCGGGGGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAACTTGAAGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCTCTTCCCATGGATACATTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTACATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATCCTGAAGCCATCAGAACTGGCATCTGTCACCTCTTTGGAATTGGGCGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCGCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTGTTTTTGATGATGTCGATCTTGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAATGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAATATTGAAGTTTGTCTCAACTGCTGAGCACGAAGGTGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTGTGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGCGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTAACTGTAAAGCAGGTTACTCAATATATATCCGACGAACCATGGGGATGCTTTGAAACTATGAGGAAAAACATGGATTTCTTCTCAAGTGTTCAGTGTATGGGACTGCCCCCTTCTTTGGCCGTCTGTCATTTGCAGCTCCCAGCAGTTGCGATGGGGAGCGCTGAGGAGAAGGTTGTTGCTGTGATAATGGTCGGCGGTCCCACTAAAGGAACTAGATTTCGACCTCTGTCGTTGAATATTCCGAAGCCTCTTTTTCCTTTGGCCGGACAGCCGATGGTGCATCACCCAATTTCTGCTTGTAAAAGGATTCCAAACCTGGCTCAGATTTTTCTTGTTGGGTTCTATGAGGAGCGTGAATTTGCATTATATTTATCTTCCATTTCTAATGAACTGAAAGTCCCTATTAGATATTTGAAGGAACAGAAGCCACATGGTTCTGCTGGTGGACTTCTTCACTTCAGAGATCTGATCATGGAAGACAATCCGTCACATATTTTCTTGCTGAATTGTGATGTTTGCTCGAGTTTTCCACTCCCGCAAATGCTAGATGCTCACAAAAGTTATGGAGGGATGGGAACAATCCTAGTAATCAGAGTATGTGCTGAGGCAGCTCACCAGTTTGGAGAGTTGGTTGCAGATCCAACAACAAATGAACTACTTCACTATGCGGAAAAACCTGAAACTTTTGTGAGTGACCTCATAAACTGTGGGGTCTACGTATTTACACCAGACATATTTTCTGCAATTCAAGGCGTTTCTACTCAGCGGAAAGAGAGAGCAAATTTAAGTCGATTATCTAGCTTTGAAGCCCTCCAGTCTGCGGCAACAAGGAGCTTGCCGAAAGACTACGTAAGATTGGATCAAGACATTCTATCGCCCTTTGCAGGGAAGAAACAGTTATATACGTATGAAACTATGGACTACTGGGAACAGATCAAAACACCTGCAATGTCGTTGAAATGCTCTGGCTTATATCTCGCCCAATTCCGGGTCACCTCCTCCAACCTATTGGCAAGTGGAGATGGTACAAAAAATGCTATCATTACTGGTGATGTTTATATTCATCCTTCAGCTAAAGTACATCCAACTGCCAAGATTGGTCCTAATGTCTCAATATCAGCTAATGCTCGAATTGGAGCTGGTTCTAGGCTCATCAGTTGTATCATCCTTGATGATGTTGAAATTAAAGATAATGCAGTTGTCATTCATGCTATTGTTGGGTGGAAATCCTCAATTGGTCGATGGTCTCGTGTACAGGCTGATGGAGATTACAATGCAAAGCGGGGAGTTACAATTCTAGGTGAAGCAGTCACGGTTGAGGATGAAGTAGTGGTGACAAACAGCATTGTTCTCCCAAACAAGACTCTCAATGTGAGTGTTCAAGAGGAAATAATTCTATGA 2841 44.42 MAIPIPSRQLFIDGEWREPVLKKRIPISNPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMSTWKVAPALAAGCAAILKPSELASVTSLELGEICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKILKFVSTAEHEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGCFETMRKNMDFFSSVQCMGLPPSLAVCHLQLPAVAMGSAEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFYEEREFALYLSSISNELKVPIRYLKEQKPHGSAGGLLHFRDLIMEDNPSHIFLLNCDVCSSFPLPQMLDAHKSYGGMGTILVIRVCAEAAHQFGELVADPTTNELLHYAEKPETFVSDLINCGVYVFTPDIFSAIQGVSTQRKERANLSRLSSFEALQSAATRSLPKDYVRLDQDILSPFAGKKQLYTYETMDYWEQIKTPAMSLKCSGLYLAQFRVTSSNLLASGDGTKNAIITGDVYIHPSAKVHPTAKIGPNVSISANARIGAGSRLISCIILDDVEIKDNAVVIHAIVGWKSSIGRWSRVQADGDYNAKRGVTILGEAVTVEDEVVVTNSIVLPNKTLNVSVQEEIIL 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28937996 28949315 - CcPI632755_06g018720.1 Cco06g1872 182472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1872 946 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Cco06g1872 946 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Cco06g1872 946 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 528 807 IPR029044 -
Cco06g1872 946 CDD M1P_guanylylT_A_like_N 540 805 - -
Cco06g1872 946 FunFam Mannose-1-phosphate guanyltransferase alpha 537 809 - -
Cco06g1872 946 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Cco06g1872 946 CDD ALDH_F10_BADH 27 487 - -
Cco06g1872 946 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Cco06g1872 946 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Cco06g1872 946 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Cco06g1872 946 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Cco06g1872 946 Gene3D Hexapeptide repeat proteins 815 943 - -
Cco06g1872 946 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Cco06g1872 946 FunFam Putative GDP-mannose pyrophosphorylase 815 943 - -
Cco06g1872 946 SUPERFAMILY Nucleotide-diphospho-sugar transferases 538 888 IPR029044 -
Cco06g1872 946 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491(InterPro)
Cco06g1872 946 Pfam Nucleotidyl transferase 540 750 IPR005835 GO:0009058(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1872 Cco-Chr6:28937996 Cco11g1635 Cco-Chr11:29176048 1.50E-38 dispersed
Cco02g1789 Cco-Chr2:30762913 Cco06g1872 Cco-Chr6:28937996 9.80E-99 transposed
Cco02g2007 Cco-Chr2:33017619 Cco06g1872 Cco-Chr6:28937996 1.50E-69 transposed
Cco02g2482 Cco-Chr2:37147163 Cco06g1872 Cco-Chr6:28937996 2.00E-26 transposed
Cco04g1587 Cco-Chr4:31233484 Cco06g1872 Cco-Chr6:28937996 2.20E-39 transposed
Cco06g0462 Cco-Chr6:5080864 Cco06g1872 Cco-Chr6:28937996 5.50E-58 transposed
Cco06g1169 Cco-Chr6:20784425 Cco06g1872 Cco-Chr6:28937996 4.40E-101 transposed
Cco06g1894 Cco-Chr6:29133337 Cco06g1872 Cco-Chr6:28937996 1.30E-98 transposed
Cco09g0105 Cco-Chr9:910377 Cco06g1872 Cco-Chr6:28937996 2.80E-47 transposed
Cco11g0676 Cco-Chr11:7348692 Cco06g1872 Cco-Chr6:28937996 7.10E-48 transposed
Cco10g1450 Cco-Chr10:27622774 Cco06g1872 Cco-Chr6:28937996 2.80E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1872 K00130 - csv:101213657 947.192