Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1872 ATGGCGATTCCCATTCCCAGCCGACAGCTGTTCATCGACGGCGAGTGGAGGGAACCAGTCCTCAAGAAGCGCATCCCCATCAGCAACCCCACTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCGGGGGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAACTTGAAGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCTCTTCCCATGGATACATTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTACATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATCCTGAAGCCATCAGAACTGGCATCTGTCACCTCTTTGGAATTGGGCGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCGCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTGTTTTTGATGATGTCGATCTTGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAATGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAATATTGAAGTTTGTCTCAACTGCTGAGCACGAAGGTGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTGTGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGCGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTAACTGTAAAGCAGGTTACTCAATATATATCCGACGAACCATGGGGATGCTTTGAAACTATGAGGAAAAACATGGATTTCTTCTCAAGTGTTCAGTGTATGGGACTGCCCCCTTCTTTGGCCGTCTGTCATTTGCAGCTCCCAGCAGTTGCGATGGGGAGCGCTGAGGAGAAGGTTGTTGCTGTGATAATGGTCGGCGGTCCCACTAAAGGAACTAGATTTCGACCTCTGTCGTTGAATATTCCGAAGCCTCTTTTTCCTTTGGCCGGACAGCCGATGGTGCATCACCCAATTTCTGCTTGTAAAAGGATTCCAAACCTGGCTCAGATTTTTCTTGTTGGGTTCTATGAGGAGCGTGAATTTGCATTATATTTATCTTCCATTTCTAATGAACTGAAAGTCCCTATTAGATATTTGAAGGAACAGAAGCCACATGGTTCTGCTGGTGGACTTCTTCACTTCAGAGATCTGATCATGGAAGACAATCCGTCACATATTTTCTTGCTGAATTGTGATGTTTGCTCGAGTTTTCCACTCCCGCAAATGCTAGATGCTCACAAAAGTTATGGAGGGATGGGAACAATCCTAGTAATCAGAGTATGTGCTGAGGCAGCTCACCAGTTTGGAGAGTTGGTTGCAGATCCAACAACAAATGAACTACTTCACTATGCGGAAAAACCTGAAACTTTTGTGAGTGACCTCATAAACTGTGGGGTCTACGTATTTACACCAGACATATTTTCTGCAATTCAAGGCGTTTCTACTCAGCGGAAAGAGAGAGCAAATTTAAGTCGATTATCTAGCTTTGAAGCCCTCCAGTCTGCGGCAACAAGGAGCTTGCCGAAAGACTACGTAAGATTGGATCAAGACATTCTATCGCCCTTTGCAGGGAAGAAACAGTTATATACGTATGAAACTATGGACTACTGGGAACAGATCAAAACACCTGCAATGTCGTTGAAATGCTCTGGCTTATATCTCGCCCAATTCCGGGTCACCTCCTCCAACCTATTGGCAAGTGGAGATGGTACAAAAAATGCTATCATTACTGGTGATGTTTATATTCATCCTTCAGCTAAAGTACATCCAACTGCCAAGATTGGTCCTAATGTCTCAATATCAGCTAATGCTCGAATTGGAGCTGGTTCTAGGCTCATCAGTTGTATCATCCTTGATGATGTTGAAATTAAAGATAATGCAGTTGTCATTCATGCTATTGTTGGGTGGAAATCCTCAATTGGTCGATGGTCTCGTGTACAGGCTGATGGAGATTACAATGCAAAGCGGGGAGTTACAATTCTAGGTGAAGCAGTCACGGTTGAGGATGAAGTAGTGGTGACAAACAGCATTGTTCTCCCAAACAAGACTCTCAATGTGAGTGTTCAAGAGGAAATAATTCTATGA 2841 44.42 MAIPIPSRQLFIDGEWREPVLKKRIPISNPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMSTWKVAPALAAGCAAILKPSELASVTSLELGEICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKILKFVSTAEHEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGCFETMRKNMDFFSSVQCMGLPPSLAVCHLQLPAVAMGSAEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFYEEREFALYLSSISNELKVPIRYLKEQKPHGSAGGLLHFRDLIMEDNPSHIFLLNCDVCSSFPLPQMLDAHKSYGGMGTILVIRVCAEAAHQFGELVADPTTNELLHYAEKPETFVSDLINCGVYVFTPDIFSAIQGVSTQRKERANLSRLSSFEALQSAATRSLPKDYVRLDQDILSPFAGKKQLYTYETMDYWEQIKTPAMSLKCSGLYLAQFRVTSSNLLASGDGTKNAIITGDVYIHPSAKVHPTAKIGPNVSISANARIGAGSRLISCIILDDVEIKDNAVVIHAIVGWKSSIGRWSRVQADGDYNAKRGVTILGEAVTVEDEVVVTNSIVLPNKTLNVSVQEEIIL 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28937996 28949315 - CcPI632755_06g018720.1 Cco06g1872 182472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1872 946 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Cco06g1872 946 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Cco06g1872 946 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 528 807 IPR029044 -
Cco06g1872 946 CDD M1P_guanylylT_A_like_N 540 805 - -
Cco06g1872 946 FunFam Mannose-1-phosphate guanyltransferase alpha 537 809 - -
Cco06g1872 946 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Cco06g1872 946 CDD ALDH_F10_BADH 27 487 - -
Cco06g1872 946 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Cco06g1872 946 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Cco06g1872 946 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Cco06g1872 946 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Cco06g1872 946 Gene3D Hexapeptide repeat proteins 815 943 - -
Cco06g1872 946 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Cco06g1872 946 FunFam Putative GDP-mannose pyrophosphorylase 815 943 - -
Cco06g1872 946 SUPERFAMILY Nucleotide-diphospho-sugar transferases 538 888 IPR029044 -
Cco06g1872 946 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491(InterPro)
Cco06g1872 946 Pfam Nucleotidyl transferase 540 750 IPR005835 GO:0009058(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1872 K00130 - - csv:101213657 947.192
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1872 Cco-Chr6:28937996 Cco11g1635 Cco-Chr11:29176048 1.50E-38 dispersed
Cco02g1789 Cco-Chr2:30762913 Cco06g1872 Cco-Chr6:28937996 9.80E-99 transposed
Cco02g2007 Cco-Chr2:33017619 Cco06g1872 Cco-Chr6:28937996 1.50E-69 transposed
Cco02g2482 Cco-Chr2:37147163 Cco06g1872 Cco-Chr6:28937996 2.00E-26 transposed
Cco04g1587 Cco-Chr4:31233484 Cco06g1872 Cco-Chr6:28937996 2.20E-39 transposed
Cco06g0462 Cco-Chr6:5080864 Cco06g1872 Cco-Chr6:28937996 5.50E-58 transposed
Cco06g1169 Cco-Chr6:20784425 Cco06g1872 Cco-Chr6:28937996 4.40E-101 transposed
Cco06g1894 Cco-Chr6:29133337 Cco06g1872 Cco-Chr6:28937996 1.30E-98 transposed
Cco09g0105 Cco-Chr9:910377 Cco06g1872 Cco-Chr6:28937996 2.80E-47 transposed
Cco11g0676 Cco-Chr11:7348692 Cco06g1872 Cco-Chr6:28937996 7.10E-48 transposed
Cco10g1450 Cco-Chr10:27622774 Cco06g1872 Cco-Chr6:28937996 2.80E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1169 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 1.6e-212 735.7
Cco02g1789 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.5 5.1e-158 554.7
Cco06g1894 . 67 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 1.7e-153 539.7
Cco06g1894 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 75.9 1.0e-249 859.4
Cco02g1789 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 8.2e-247 849.7
Cco06g1169 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.4e-161 566.6
Cco02g1789 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 1.6e-170 595.9
Cco06g1894 . 46 395 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 3.5e-165 578.2
Cco06g1169 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 2.9e-103 372.5
Cco11g1635 . 13 479 Aldehyde Dehydrogenase Gene Family AT4G34240 64.5 3.0e-180 628.6
Cco11g1636 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 6.9e-177 617.5
Cco11g1635 . 67 477 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cco11g1636 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.2e-176 616.3
Cco02g2482 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 1.4e-116 416.8
Cco07g0963 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 1.1e-184 643.3
Cco02g2482 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.3e-158 556.6
Cco02g2007 . 37 654 Aldehyde Dehydrogenase Gene Family AT1G79440 60.9 5.7e-208 720.7
Cco09g1819 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 3.7e-240 827.8
Cco04g1587 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.5 4.6e-182 634.8
Cco06g1872 . 1 499 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 5.3e-248 853.6
Cco06g1872 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 6.3e-249 856.7
Cco02g1833 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.4e-269 922.5
Cco01g1581 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.4 5.5e-262 900.2
Cco06g0462 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 7.2e-276 946.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37