Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1876 ATGGCTTTCTTTCCTCCTCCCGCTTTCCTTTTTGCAATTTTGCTATCCGTTGTTCCATTCTCAGTTGAATCGAAACTTTCTCTTGATTATTACCAGAAAACTTGCCCCGATTTTGCCAGAATCGTCAGTGAAACCGTCGCTAACAAGGTGGCTTCTAGCCCAACCACCACCGCCGCAACTATGCGTCTCTTCCTCAACGATTGTTTAGTTGGAGGTTGCGATGGCTCTGTTCTCGTTGCTTCTAACGCCTTCAATCACGCCGAGCGCGATGCTGAAATCAATCTTTCTCTTCCAGGAGACGCGTTCGACGTCGTCGCTCGATCGAAGATCACCTTAGAGCTTTCTTGCCCCGGGATCGTCTCTTGTTCCGACGTATTAGCACAAGCGACTCGCGATCTCATCGCGATTGCAGGCGGACCGTCGTACAATGTTCAATTAGGGCGAAAAGACAGCCTGGTATCGAAATCTTCCGAAGTGGAAGGCAATATTCCGAAGGCGAATCAAACAATTGACGAGATGATTAAGCTATTCACATCGAAAGGATTCACGATTCAAGAAATGGTAGCGTTGTACGGCGGACGAACAATCGGATTCTCAAATTGCAAGGAATTCAGCGATCGTATCTTCAAGTTTAGCAAGGAAACACCAACAGATCCAGAGATTCATCCAAAGTTTGCAGAGGCTTTGAAAAAGACTTGCGAAGGATATGAGAAGAATCCGGGAATGTCGGCTTACAGCGACGCCGTAACGCCGGGGAAATTTGATAATGTGTATTACCAGAATCTGCTTAGGGGAATGGGGTTATCGGCGTCGGATCATGCGTTGGTGAAGGATCCGAGAACGAGGAAATTCGTGGAGATGTACGCCGGAAATCAAGCGTTGTTCTTCAAGGATTTTGCACACGCCATGGAGAAGATGAGCGTTCGTGAAGTGAAAACCCGTGGGAAAGGAGAAGTGAGGAGGAAATGCGATGCGTTCAATGAAATCCACACTTGA 996 47.49 MAFFPPPAFLFAILLSVVPFSVESKLSLDYYQKTCPDFARIVSETVANKVASSPTTTAATMRLFLNDCLVGGCDGSVLVASNAFNHAERDAEINLSLPGDAFDVVARSKITLELSCPGIVSCSDVLAQATRDLIAIAGGPSYNVQLGRKDSLVSKSSEVEGNIPKANQTIDEMIKLFTSKGFTIQEMVALYGGRTIGFSNCKEFSDRIFKFSKETPTDPEIHPKFAEALKKTCEGYEKNPGMSAYSDAVTPGKFDNVYYQNLLRGMGLSASDHALVKDPRTRKFVEMYAGNQALFFKDFAHAMEKMSVREVKTRGKGEVRRKCDAFNEIHT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28979069 28980064 - CcPI632755_06g018760.1 Cco06g1876 182476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1876 331 ProSiteProfiles Plant heme peroxidase family profile. 25 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 Gene3D Peroxidase, domain 2 164 306 - -
Cco06g1876 331 FunFam Peroxidase 164 306 - -
Cco06g1876 331 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 Gene3D - 29 327 - -
Cco06g1876 331 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 FunFam Peroxidase 29 175 - -
Cco06g1876 331 CDD secretory_peroxidase 25 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco06g1876 331 Pfam Peroxidase 42 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1876 331 PANTHER - 13 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1876 Cco-Chr6:28979069 Cco11g0730 Cco-Chr11:8065039 8.20E-72 dispersed
Cco01g1437 Cco-Chr1:26147403 Cco06g1876 Cco-Chr6:28979069 2.50E-121 wgd
Cco10g1444 Cco-Chr10:27562999 Cco06g1876 Cco-Chr6:28979069 4.00E-103 wgd
Cco06g1876 Cco-Chr6:28979069 Cco09g2080 Cco-Chr9:35195624 1.20E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1876 K00430 - csv:101213178 581.252