Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1878 ATGTTGGTCTTTTTAGTTCATTGCAATCTCCGCCAATACCATCGCATCGTCTTGTATCTGTATGTCTTCTGGCCTCCTATGTTGTCGCAGAAAAGAAACCCAGATGATGGAGATGGTCCGGCGGATGGTGATAATCCCGATGATAAGCGTAGAAAGTTTTGTTTATGGAGGTACTACTACTACTACACGGTTAGAACTCGAAGTAGGAATTTGGTGCGATCTGGCTTCACTGGTTTGATTGAATTTTGGGAACTGTGGGTGAAAGTGCTAGATGTTTATTGTTTAAGGATTTTTTGGGTGGATTCTAGGGACTATTCTGAGGAGAGGAAAATGATCGTGGTTCGTGATGCCACATCATTGCAATCAATGCAACAACTATTGGAGCCAGTCATTCGTAAAGTGGTAAGGGAGGAGATTGAATCGGCACTAAGAAAGTACATTACCAATGTGCAAAGGAATGACGAGAATGATGGGAAAGAAATCTATTCTTCCGGGCCGAGATGCTATCAATTGAAGTTCATAACTGATATTTCTCTTCCGGTATTTACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAACTTGATGGTGGCTTTGGTTGACACCTTAACTGGGGAAGTTGTTGGCACTGGGACTCAATCCTCAGCCAAAGTGGAAATTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAAGTGATAGTTACACTGCAGAGGAGTTCAAGAATAACATTGTAAGAGAGAGGGAAGGGAAGAAACCACTTCTTACAGGAGATACATGTGTGAGTCTCAAAGATGGCATTGGTTTGGTAGGTGAAATTTCTTTCACTGACAATTCAAGCTGGACTAGAAGCCGTCGGTTCAGGCTCGGTGCAAGAATTATAGACAACAATGATGGAATGAGAATACTGGAAGCAAAGACTGCGTCATTTGTGGTCAGAGATCACCGTGGAGAATTGTACAAAAAGCACCACCCTCCATTTCTGCAGGATGAAGTATGGAGATTGCAGAAAATTAGCAAGGATGGAGCCTATCATAAGCGCCTGAGCCAAGAAAAAATTGAGACAGTGAAAGATTTCCTTACTCTGCTTTATATACAACCTTCAAGGCTTCGTAATATTCTTGGCCCTGGCATGTCTACGAAAATGTGGGAAACTACAATTGAGCATGCACAGACATGTGTGCTCGATCGGAAGATTTACGTGTACAATCCTCGTGATTTGGAACAGAAAAGCGGAGTGGTCTTTAATGTTGTAGGACAAGTGATGGGGCTACTTTCAGCTCACCAGTACGTTCCCATAGATAAGCTATCTGAAAGTGAAAAGGCTGATGCTCATAACTTGGTTATCTCTGCGTACAAACACTGGGAAGAAGTCAACTCCATTGATGATGAAACTTCTCTTGTGGGTGGCTCTTCTCACCCACTCAGTTTCCTTTACACCCCCAGCTCACCCATGGAGGACCATTATGGTAGCAAGTACTTGGCTTCTCCAAAATTTAGTGGCTTTGATTTCACACCATCAAATGTCTATTCGTCTGACATAATTTCATCGATGGGTTCTATTGGGAATCCTAGCAGCTTGGACGATCATGCTTTGCAGGGTTTTGATTCTATGGTTGTAAGATATGATCAGATACCAAGTTCCCCAAACTTTGCCAACTCTTCTCTGATCTGCGATTCCGAGCCACTAAACTCATCTTTCTTTGATGTGGATCATACACAAGTTTTAGAGTCTGATTTGCAATGCAGCTCGATTTTAGAATCACGAGCAATTACAACAACTCTTCAAGGTGGCTCCTCATCATGTGGTGCTCAAATGAGATGGGCTAAATTATATGGTGTCCTAAAATGGTACATTTTGTTGAGGTTGGTAATTAGGAGAAACAAACGCGGGTTTGAGAGATACAAAGGTATACAGGGTCTTGGAAAGGAAAAATTGGACTAA 1941 42.56 MLVFLVHCNLRQYHRIVLYLYVFWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCLWRYYYYYTVRTRSRNLVRSGFTGLIEFWELWVKVLDVYCLRIFWVDSRDYSEERKMIVVRDATSLQSMQQLLEPVIRKVVREEIESALRKYITNVQRNDENDGKEIYSSGPRCYQLKFITDISLPVFTGARIEGRDGSNLMVALVDTLTGEVVGTGTQSSAKVEIVVLEGDFEGGSDSYTAEEFKNNIVREREGKKPLLTGDTCVSLKDGIGLVGEISFTDNSSWTRSRRFRLGARIIDNNDGMRILEAKTASFVVRDHRGELYKKHHPPFLQDEVWRLQKISKDGAYHKRLSQEKIETVKDFLTLLYIQPSRLRNILGPGMSTKMWETTIEHAQTCVLDRKIYVYNPRDLEQKSGVVFNVVGQVMGLLSAHQYVPIDKLSESEKADAHNLVISAYKHWEEVNSIDDETSLVGGSSHPLSFLYTPSSPMEDHYGSKYLASPKFSGFDFTPSNVYSSDIISSMGSIGNPSSLDDHALQGFDSMVVRYDQIPSSPNFANSSLICDSEPLNSSFFDVDHTQVLESDLQCSSILESRAITTTLQGGSSSCGAQMRWAKLYGVLKWYILLRLVIRRNKRGFERYKGIQGLGKEKLD 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28994145 28999320 + CcPI632755_06g018780.1 Cco06g1878 182478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1878 646 PANTHER OS02G0177800 PROTEIN 114 621 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Cco06g1878 646 Pfam Calmodulin binding protein-like N-terminal domain 169 314 IPR046831 -
Cco06g1878 646 Pfam Calmodulin binding protein central domain 327 392 IPR046830 -
Cco06g1878 646 Pfam Calmodulin binding protein C-terminal domain 397 459 IPR046829 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1826 Cco-Chr3:32921524 Cco06g1878 Cco-Chr6:28994145 1.40E-53 dispersed
Cco06g1513 Cco-Chr6:25640849 Cco06g1878 Cco-Chr6:28994145 3.60E-92 dispersed
Cco06g1878 Cco-Chr6:28994145 Cco02g1639 Cco-Chr2:28988606 1.30E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1878 - - - 0.0