Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1886 ATGGCTTCCAGTGCTTCAAGGTTCATCAAGTGCGTTACGGTTGGAGATGGGGCTGTTGGGAAGACTTGCATGCTCATATGTTATACTAGCAACAAATTCCCCACTTTCCATTTTCTGATCTTCTCTGCTGCTATTGATGTGCTTTCAGCCTGTTTATCTCATGATTTTCGGTTCCAATTGCTCTCTTTCCTTTGTGACATTAATGATTACATTCCCACTGTGTTTGACAACTTCAGTGCAAATGTGGTGGTTGAAGGCACCACTGTCAATTTAGGCCTCTGGGATACAGCCGGTCAAGAAGATTACAATAGGTTAAGGCCATTGAGCTACAGAGGAGCTGATGTTTTCATCCTTGCTTTTTCGTTAGTTAGCCGAGCAAGTTACGAAAACGTACTTAAGAAGTGGATTCCGGAGCTTCAACATTATGCACCTGGAGTCCCGGTGGTGTTGGTTGGCACCAAATTGGGAAAGTCCTTGACTAGAGAAGACCCTGTTATCTTCATTTGGAGTGCTTCCAAAGGGCAGGACCTTGTCGTTATAGATCGGAGTTCAGACAAAGGTCCTGGGTCGGGCCTCCAATGGAATGATAATCTTCGAGAGGACAAATTCTATTTGGCTGATCATCCCGGATTGGTGCCCGTAACCACTTCGCAGGGTGAGGAACTCCGTAAACAGATCGGTGCCACGTATTACATCGAATGCAGCTCAAAAACCCAGCAGAATGTGAAAGCAGTTTTTGATGCAGCAATAAAGGTGGTTATCAAGCCACCACAGAAACAAAAAGAAAAGAAAAGGCCGCACCGTGGGTGTCTCCTAAATGTGTTTTGTGGAAGAAACCTTACAAGGCAAAGTTGA 855 45.03 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTFHFLIFSAAIDVLSACLSHDFRFQLLSFLCDINDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTKLGKSLTREDPVIFIWSASKGQDLVVIDRSSDKGPGSGLQWNDNLREDKFYLADHPGLVPVTTSQGEELRKQIGATYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKRPHRGCLLNVFCGRNLTRQS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29061116 29063820 - CcPI632755_06g018860.1 Cco06g1886 182486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1886 284 PANTHER RHO FAMILY GTPASE 7 263 IPR003578 GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005856(PANTHER)|GO:0007163(PANTHER)|GO:0007264(InterPro)|GO:0008360(PANTHER)|GO:0019901(PANTHER)|GO:0030865(PANTHER)|GO:0031410(PANTHER)|GO:0032956(PANTHER)|GO:0042995(PANTHER)
Cco06g1886 284 PRINTS Transforming protein P21 ras signature 9 30 - -
Cco06g1886 284 PRINTS Transforming protein P21 ras signature 82 104 - -
Cco06g1886 284 PRINTS Transforming protein P21 ras signature 231 253 - -
Cco06g1886 284 SMART ras_sub_4 6 256 - -
Cco06g1886 284 Pfam Ras family 10 35 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g1886 284 Pfam Ras family 68 155 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g1886 284 Pfam Ras family 213 253 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g1886 284 ProSiteProfiles small GTPase Rab1 family profile. 4 284 - -
Cco06g1886 284 ProSiteProfiles small GTPase Ras family profile. 4 272 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g1886 284 CDD Rop_like 8 254 - -
Cco06g1886 284 Gene3D - 7 267 IPR027417 -
Cco06g1886 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 261 IPR027417 -
Cco06g1886 284 NCBIfam small GTP-binding protein domain 68 156 IPR005225 GO:0005525(InterPro)
Cco06g1886 284 ProSiteProfiles small GTPase Rho family profile. 2 253 - -
Cco06g1886 284 SMART rab_sub_5 9 256 - -
Cco06g1886 284 SMART rho_sub_3 11 256 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1886 K04392 - - csv:101210663 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1886 Cco-Chr6:29061116 Cco10g0060 Cco-Chr10:615140 1.20E-79 dispersed
Cco06g1886 Cco-Chr6:29061116 Cco11g0256 Cco-Chr11:2507872 1.10E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g705 Blo04g00876 . . . . . . . . . Cma10g00140 Cma11g00107 Car10g00131 Car11g00106 Sed08g0145 . Cpe04g01544 Bhi02g00417 Tan09g2221 Cmetu02g0238 . Hepe09g0185 . . Cla06g01646 Cam06g1831 Cec06g1880 Cco06g1886 Clacu06g1790 Cmu06g1732 Cre06g2550 Cone2ag0888 Cone16ag0122 Cone13ag0128 Cone19ag0132 . . . . Blo13g00048 . . . . Bpe15g00483 . Bma08g00175 . Cmo10g00146 Cmo11g00109 . . . . . Cpe18g00834 . . . . . . . . . . . . . . Lsi06g01534 Csa01g00169 Chy02g02562 Cme02g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272