Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1889 ATGGCTCAGCCGGAGAGATCCACTTTAAAGGTTTCAAACGTTCCGGAATCCGCCATTGCTCAAGACCTCTTGACCTTTCTCACCTCCAAATTAGGCCCCGACTCCGTCTTCGCCATTGAAATCTTCACCGAACGGAAGAACTGGAAATCGCGCGGCTTTGGTCGTGTTCAGTTCACCACGCTCGAGGCCAAATCCAAAGCTCAATCCCTTTCTGTCCAAAACAACCTCGTCTTCAACTCCCACAACCTTAGATTCTCCGAGATCAACGATGACATTGTTGTGAGGCCAGTACACGCCAGAAACAGGACTGAGAATGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAAGATCGAATGAGTGTTTTGGAGTCTTGGGAAGGTGTGAAAGTTTGGATTATGCCGGAGAGGAGAAGGACTGAGTTCTGGATATGGCATGGACAGGAGTGTTATAAGCTTGAAGTTATGTTTGAGGAAATTCTGGAAACTACTGGATATTGTTTGGGAGATGAGAAATTGAATGCACTTCTCCTAAAGCTCAAATATGCGCCAAGAATATATAAAAAGATTTCTGGATCAAATATGGCTTCCAGATTCAGCAGTACTCGCTACCGTCTTTGCAGAGAAGATTATGACTATCTTTGGGTTCGGACAACAGAGTTTTCGCCTATGAGGTCAGTAGGTCAGTCAACTTCCTTTTGTTGGGAAGTTGAGGAAGATTTGCAGGCTGCAGATGTTTTTTCCAGTTTCCCATTTTACAAAGAAACCCAGAAAGATATTGTTTTAGAGGATTGTGAGGAATTTGGCTCTACTTCAGAGATTGTTCCTCTGATAAAATTTGGATTAGGTTCTAATCTAGCCTATGAGGTTCAATATCAGCTGAATTCTTTAGTTCATATGCAGAAAATTAGCCTTGCTGCAGCCAATGATGAACTGATTGACTTCCTTAGCTCTTTAGATTTTGATACTGCTTTAAATGTACTTCAGAGGTTACACCAGCTGAAGTTCATTTGTTATGATCCCTTGTCGTTTCTAAAGACCCAATTACATGTTCTGAAAAGGAACTGCAAAAATCTTCCTTCATCATCTCAAAAGAGGTTGTCGAATAACGTGATGAATTGTTATAGAGTCCTTGTCACTCCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCAAATTATGTTGTAAAAAACTTTGCATCACATGCTTCAGATTTTATGAGGGTTACTTTTGTTGAAGAGGATTGGAGTAAGCTTCCTGCAGGTGCCGTTACAACGAGTATACAGCGAGGCATACTCTCTAAACCTTATAGAACTGAAATCTATCATCGAATAATTACTATTCTTCGAGACGGAATTATTATTGGAGCCAAAAGGTTTGAGTTCTTGGCCTTCTCAGCTAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCCAGTGACAAATTGAAAGCAGAAGAAATTAGACAGTGGATGGGCTGCTTTGAAAAGATTCGTAGCATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACACAAGATGTTGAGATTATACCTGATATTGAAGTGAACTCCGACGGTATTGACTACTGCTTCTCGGATGGCATCGGAAAGATTTCACTTTCATTCGCAAGGCAAGTAGCCGATAAGTGTGGAGTGAATCACATCCCTTCAGCATTTCAAATTCGATATGGTGGATACAAAGGTGTCATTGCTGTTGATCGTAATTCCTTTCGTAAACTATCTTTGCGTGACAGCATGCTTAAATTTGAATCAAAGAACAAGATGCTCAATGTCACCAAGTGGAGTGACTCCATGCCCTGCTATTTAAATCGGGAGATTGTTACTCTTTTGTCAACTTTGGGAGTGAGTGACGAAAGCTTTGAGGCGTTGCAGCAAGAACAACTACATCTTCTAGGGAGAATGCTGACCGATAAAGCCGTTGCTTTGAACGTCTTGGAAAATTTGCACGGCGCTGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGTTACGAGCCAAATATCGAACCTTACCTCTCAATGATGCTTCAAGCACACTATTGGAACCTGTTTTCTGATTTAAGAAGTAGATGTAGAATATATGTTCCAAAGGGACGGATCCTCCTTGGCTGCTTGGATGAAACTGGTATTTTAAACTATGGCCAAGTGTATGCCTGCATAACCTTGACGAAATCAGAGCTGCAGGACAGGAATCAGAAATACTTCCATAAGATAGACGAGACGAAATCTATCCTGCTTGGAAAGGTAGTTGTTACAAAAAATCCATGTCTTCATCCAGGAGACGTGAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGAGAAAGGCCACATACGAATGAATGTTCAGGCGGGGATCTTGATGGAGATTTATATTTCATAAGTTGGGATGAAAATCTGATTCCTCCCAAAACTGAAGCACCTATGGACTATACAGGACGGAGACCACGTATAATGGATCACGATGTAACACTAGAGGAAATTCAAAAGTTTTTTGTTGATTATATGATCAATGACACATTAGGTGCCATTTCTACTGCACATTTGGTTCATGCTGACCGTGAACCAAAAAAAGCCCTAAGCTCGAAATGTTTAGAGCTGGCAGCGCTGCATTCCATGGCAGTTGATTTTGCAAAAACTGGAGCACCAGCGGAGATGCCTCGAATTTTAAAACCAAGGGAGTTTCCAGATTTCATGGAGAGATTTGATAAACCAATGTACATATCCAATAATGTATTAGGTAAACTATACAGGGCTGCTGTTAAGTCCATTGAGCGAGAAAGGTCAAGACTTGTGTGGTCGGAGGAGGCTGCTAGAGCAATTTACGATCATGACCTTGAAGTGGATGGCTTCGAAGCTTTCCTTGAAATAGCTGAAAGTTACAAAGACATGTACATTGAAAAAATGAGCATTTTAATGAACTACTATGGAGCAGAGTATGAAGATGAGATATTAATGGGCGATCTTCGAAGTCGAGCATCTTATCTGCAACGTGACAACCGCAAGTATGGTGATATGAAGGATCGGATTTTGCTTTCGGTAAAGCACCTACGTAAGGAAGTCAAAGAATGGTTTGAGAATAGCTGCGCCCCACACGAACACAAGATGATGGCTTCTGCATGGTATCATGTAACATATCACCCTTCTTACTTCAAGGAAGACATGTTCTACTTTAGCTTCCCATGGACTGTATCTGATGTTTTACTCAACATAAAGGCAATGAACTCCAAAAGACATCGAGCATAA 3354 41.2 MAQPERSTLKVSNVPESAIAQDLLTFLTSKLGPDSVFAIEIFTERKNWKSRGFGRVQFTTLEAKSKAQSLSVQNNLVFNSHNLRFSEINDDIVVRPVHARNRTENGVLHVGFMLKEDRMSVLESWEGVKVWIMPERRRTEFWIWHGQECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPRIYKKISGSNMASRFSSTRYRLCREDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQAADVFSSFPFYKETQKDIVLEDCEEFGSTSEIVPLIKFGLGSNLAYEVQYQLNSLVHMQKISLAAANDELIDFLSSLDFDTALNVLQRLHQLKFICYDPLSFLKTQLHVLKRNCKNLPSSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASHASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYHRIITILRDGIIIGAKRFEFLAFSASQLRSNSVWMFASSDKLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKWSDSMPCYLNREIVTLLSTLGVSDESFEALQQEQLHLLGRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIYVPKGRILLGCLDETGILNYGQVYACITLTKSELQDRNQKYFHKIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHSMAVDFAKTGAPAEMPRILKPREFPDFMERFDKPMYISNNVLGKLYRAAVKSIERERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAESYKDMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKHLRKEVKEWFENSCAPHEHKMMASAWYHVTYHPSYFKEDMFYFSFPWTVSDVLLNIKAMNSKRHRA 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29081873 29086404 + CcPI632755_06g018890.1 Cco06g1889 182489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1889 1117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 90 IPR000504 GO:0003723(InterPro)
Cco06g1889 1117 SUPERFAMILY RNA-binding domain, RBD 5 122 IPR035979 GO:0003676(InterPro)
Cco06g1889 1117 Pfam RNA dependent RNA polymerase 378 955 IPR007855 GO:0003968(InterPro)
Cco06g1889 1117 Gene3D - 1 91 IPR012677 -
Cco06g1889 1117 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 1109 IPR007855 GO:0003968(InterPro)|GO:0003968(PANTHER)|GO:0030422(PANTHER)|GO:0031380(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1889 K11699 - - csv:101209921 2097.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1889 Cco-Chr6:29081873 Cco07g0571 Cco-Chr7:7595135 5.40E-224 dispersed
Cco06g1889 Cco-Chr6:29081873 Cco08g1502 Cco-Chr8:26761848 4.90E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g714 . . Bda06g00585 . . . . Bma12g01030 . . Cma10g00138 . Car10g00129 . Sed08g0142 . . Bhi02g00421 Tan09g2226 Cmetu02g1382 . Hepe09g0188 . . Cla06g01649 Cam06g1834 Cec06g1883 Cco06g1889 Clacu06g1793 Cmu06g1735 Cre06g2553 . . Cone13ag0129 . . . . . . . . . Bpe07g00826 . . . . Cmo10g00144 . . . . . . Cpe18g00835 . . . . . . . . . . . . . . Lsi06g01537 Csa01g00166 Chy02g02565 Cme02g01954
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012365 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29