Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1891 | ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGTTATCATCCACGGATATGTTGGATTTTCCTCATACACCAAGAACGGTTCCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAGCGATTTGGAAGTTTCCTCATCTAAATGCAGAGGGAGAAAAGTTATAGTGGCAAATTTTCTCCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAAATTCAGTTTTGATGAGGATTCAATTTTGCTTCAGCTGAAGGATGGCTTCTCACCTGATGTAGATGTTATATATGTTGGATCATTAAAGGTCGATGTTGATGTCCGAGAGCAAGATGAGGTTTCTCAGAAACTGCTGGAGGAATTCAACTGCGCACCGACTTTCATTCCTGCATACCTTCAGAAACAGTACTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTATCACGGATCTCGCTTTGATCGACATCTCTGGCAAGCGTATCTTTCAGTCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATCTTGAAGAAGATTATGTCTGGATTCATGATTATCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATTAAGCTCGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAACGTAGATCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGTGGATATCTCACGCTCGAGTATTTTGGCCGCACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATAGGTCGACTTGAATCTGCATTAAACCAACCGCACACTTCAATGAAGGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAGAAACTTATTCTTGGTGTTGATGACATGGACATCTTTAAAGGTATCGGTCTGAAGTTATTAGCTATGGAACAGCTCTTGAAACAGCATCCAGAGTTAAGGGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGCAATGGGAATGATGTCCAGGAAGCAAAGCGGGAAACTTATGAGATAACCAAAAGGATTAACAAGGTTTTTGGTTGTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCGTATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATGAACTCTTGGAAGTCTCCCCGAATTCACCTCGTACCAGCACGATTGTCGTGTCCGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCCTGGGATTTTGATGCCGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAAAAGCAACTGAGGCACGAAAAGCATTACCGATATATTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCACAAGATTTGGAGCGAGCATGCCGAGAACACTACAGTAAACGATGCTGGGGCATTGGTTTTGGTTTAGGTTTCAGAATTTTGTCACTCTCTCCAAGTTTCAGGAAGCTTTCCATTGAACACATTGGCTCTGCATATAGAAGCGCCTCTAGGAGGGCAATATTTCTGGATTACGATGGGACTGTGGTTTCTGAAACTTCGTTGGTTAAATCTCCGTCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATTCAAAGAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCATGGTTCGATTTGTGTAAGAATCTAGGTATTGCTGCTGAACATGGATACTATTTGAGGTGGAATAAGGATTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTTTGTTGGAAAAGGATCGCAGAACCAGTGATGAAACTATATACTGAGGCCACCGATGGCTCATACATTGAGACCAAGGACAGTGCGTTGGTATGGCACCATCAAGACGCTGACCCTTATTTTGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTAGTTGTTAAAAGAGGTCAGCAGATCGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAACTCGAATAAAGCACCGGACTTTGTGTTGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAGAGCATATCTAGCACAAGCTATAGCTCATCCCTTGCCAGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGATGATACCACCGACGTTTTGACCTTGCTTCAAAGCCTGGCCACCCCTTCTACACGTAAACTGAGGCCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATATCAAACTGGAGAACAAACCTTTACTGAGTCGGGATCGTCTCGATTGCCCGACTCTTTGCCACAGTTACTGGTGCCAATGGGTTGAATTCAGGAAGATAATTGCTTGGCTAGAATATAGTGAACAGGCGAAGAAGAGGCATCTCCATGTTCTTGATTACGGTGTTTTAGGGAAAATCTTCTCGTTCTTTGTTTACATATCGAACGAGCATGAAGACACCCGAAATCCTCACTTACCTGCCATTGATGAGCAACAAGATGGCTTTTGGATCTGA | 2835 | 42.57 | MLSSSCLSLLELSSTDMLDFPHTPRTVPRVMTASGIFSDKDSDLEVSSSKCRGRKVIVANFLPLHAKKDPDSGKWKFSFDEDSILLQLKDGFSPDVDVIYVGSLKVDVDVREQDEVSQKLLEEFNCAPTFIPAYLQKQYYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSVNKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNVDLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHIGRLESALNQPHTSMKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLKQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGCPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDELLEVSPNSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYISSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLVKSPSPEVISIINNLCTDSKNTVFIVSGRGKDSLGSWFDLCKNLGIAAEHGYYLRWNKDSDWEVSPLAENFCWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSTSYSSSLASPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSFETRVLFEDDIKLENKPLLSRDRLDCPTLCHSYWCQWVEFRKIIAWLEYSEQAKKRHLHVLDYGVLGKIFSFFVYISNEHEDTRNPHLPAIDEQQDGFWI | 944 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29090685 | 29094416 | - | CcPI632755_06g018910.1 | Cco06g1891 | 182491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1891 | 944 | CDD | HAD_TPP | 587 | 826 | - | - | |
Cco06g1891 | 944 | SUPERFAMILY | HAD-like | 586 | 834 | IPR036412 | - | |
Cco06g1891 | 944 | Gene3D | - | 585 | 700 | IPR023214 | - | |
Cco06g1891 | 944 | Gene3D | - | 715 | 844 | IPR023214 | - | |
Cco06g1891 | 944 | CDD | GT20_TPS | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Cco06g1891 | 944 | NCBIfam | trehalose-phosphatase | 583 | 834 | IPR003337 | GO:0005992(InterPro) | |
Cco06g1891 | 944 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 47 | 306 | - | - | |
Cco06g1891 | 944 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 585 | 702 | - | - | |
Cco06g1891 | 944 | FunFam | Trehalose-6-phosphate synthase 2 | 670 | 748 | - | - | |
Cco06g1891 | 944 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 308 | 523 | - | - | |
Cco06g1891 | 944 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 54 | 543 | - | - | |
Cco06g1891 | 944 | Pfam | Glycosyltransferase family 20 | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Cco06g1891 | 944 | NCBIfam | HAD-IIB family hydrolase | 587 | 788 | IPR006379 | - | |
Cco06g1891 | 944 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 24 | 835 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Cco06g1891 | 944 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 715 | 846 | - | - | |
Cco06g1891 | 944 | Gene3D | Glycogen Phosphorylase B; | 47 | 306 | - | - | |
Cco06g1891 | 944 | Pfam | Trehalose-phosphatase | 589 | 823 | IPR003337 | GO:0005992(InterPro) | |
Cco06g1891 | 944 | Gene3D | Glycogen Phosphorylase B; | 307 | 523 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1891 | Cco-Chr6:29090685 | Cco10g0149 | Cco-Chr10:1434337 | 0.00E+00 | dispersed | |
Cco05g2787 | Cco-Chr5:35639349 | Cco06g1891 | Cco-Chr6:29090685 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1891 | K16055 | - | csv:101209676 | 1647.1 |