Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1891 ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGTTATCATCCACGGATATGTTGGATTTTCCTCATACACCAAGAACGGTTCCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAGCGATTTGGAAGTTTCCTCATCTAAATGCAGAGGGAGAAAAGTTATAGTGGCAAATTTTCTCCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAAATTCAGTTTTGATGAGGATTCAATTTTGCTTCAGCTGAAGGATGGCTTCTCACCTGATGTAGATGTTATATATGTTGGATCATTAAAGGTCGATGTTGATGTCCGAGAGCAAGATGAGGTTTCTCAGAAACTGCTGGAGGAATTCAACTGCGCACCGACTTTCATTCCTGCATACCTTCAGAAACAGTACTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTATCACGGATCTCGCTTTGATCGACATCTCTGGCAAGCGTATCTTTCAGTCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATCTTGAAGAAGATTATGTCTGGATTCATGATTATCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATTAAGCTCGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAACGTAGATCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGTGGATATCTCACGCTCGAGTATTTTGGCCGCACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATAGGTCGACTTGAATCTGCATTAAACCAACCGCACACTTCAATGAAGGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAGAAACTTATTCTTGGTGTTGATGACATGGACATCTTTAAAGGTATCGGTCTGAAGTTATTAGCTATGGAACAGCTCTTGAAACAGCATCCAGAGTTAAGGGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGCAATGGGAATGATGTCCAGGAAGCAAAGCGGGAAACTTATGAGATAACCAAAAGGATTAACAAGGTTTTTGGTTGTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCGTATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATGAACTCTTGGAAGTCTCCCCGAATTCACCTCGTACCAGCACGATTGTCGTGTCCGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCCTGGGATTTTGATGCCGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAAAAGCAACTGAGGCACGAAAAGCATTACCGATATATTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCACAAGATTTGGAGCGAGCATGCCGAGAACACTACAGTAAACGATGCTGGGGCATTGGTTTTGGTTTAGGTTTCAGAATTTTGTCACTCTCTCCAAGTTTCAGGAAGCTTTCCATTGAACACATTGGCTCTGCATATAGAAGCGCCTCTAGGAGGGCAATATTTCTGGATTACGATGGGACTGTGGTTTCTGAAACTTCGTTGGTTAAATCTCCGTCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATTCAAAGAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCATGGTTCGATTTGTGTAAGAATCTAGGTATTGCTGCTGAACATGGATACTATTTGAGGTGGAATAAGGATTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTTTGTTGGAAAAGGATCGCAGAACCAGTGATGAAACTATATACTGAGGCCACCGATGGCTCATACATTGAGACCAAGGACAGTGCGTTGGTATGGCACCATCAAGACGCTGACCCTTATTTTGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTAGTTGTTAAAAGAGGTCAGCAGATCGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAACTCGAATAAAGCACCGGACTTTGTGTTGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAGAGCATATCTAGCACAAGCTATAGCTCATCCCTTGCCAGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGATGATACCACCGACGTTTTGACCTTGCTTCAAAGCCTGGCCACCCCTTCTACACGTAAACTGAGGCCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATATCAAACTGGAGAACAAACCTTTACTGAGTCGGGATCGTCTCGATTGCCCGACTCTTTGCCACAGTTACTGGTGCCAATGGGTTGAATTCAGGAAGATAATTGCTTGGCTAGAATATAGTGAACAGGCGAAGAAGAGGCATCTCCATGTTCTTGATTACGGTGTTTTAGGGAAAATCTTCTCGTTCTTTGTTTACATATCGAACGAGCATGAAGACACCCGAAATCCTCACTTACCTGCCATTGATGAGCAACAAGATGGCTTTTGGATCTGA 2835 42.57 MLSSSCLSLLELSSTDMLDFPHTPRTVPRVMTASGIFSDKDSDLEVSSSKCRGRKVIVANFLPLHAKKDPDSGKWKFSFDEDSILLQLKDGFSPDVDVIYVGSLKVDVDVREQDEVSQKLLEEFNCAPTFIPAYLQKQYYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSVNKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNVDLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHIGRLESALNQPHTSMKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLKQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGCPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDELLEVSPNSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYISSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLVKSPSPEVISIINNLCTDSKNTVFIVSGRGKDSLGSWFDLCKNLGIAAEHGYYLRWNKDSDWEVSPLAENFCWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSTSYSSSLASPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSFETRVLFEDDIKLENKPLLSRDRLDCPTLCHSYWCQWVEFRKIIAWLEYSEQAKKRHLHVLDYGVLGKIFSFFVYISNEHEDTRNPHLPAIDEQQDGFWI 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29090685 29094416 - CcPI632755_06g018910.1 Cco06g1891 182491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1891 944 CDD HAD_TPP 587 826 - -
Cco06g1891 944 SUPERFAMILY HAD-like 586 834 IPR036412 -
Cco06g1891 944 Gene3D - 585 700 IPR023214 -
Cco06g1891 944 Gene3D - 715 844 IPR023214 -
Cco06g1891 944 CDD GT20_TPS 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco06g1891 944 NCBIfam trehalose-phosphatase 583 834 IPR003337 GO:0005992(InterPro)
Cco06g1891 944 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Cco06g1891 944 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
Cco06g1891 944 FunFam Trehalose-6-phosphate synthase 2 670 748 - -
Cco06g1891 944 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Cco06g1891 944 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Cco06g1891 944 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco06g1891 944 NCBIfam HAD-IIB family hydrolase 587 788 IPR006379 -
Cco06g1891 944 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 835 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco06g1891 944 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 715 846 - -
Cco06g1891 944 Gene3D Glycogen Phosphorylase B; 47 306 - -
Cco06g1891 944 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0005992(InterPro)
Cco06g1891 944 Gene3D Glycogen Phosphorylase B; 307 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1891 K16055 - - csv:101209676 1647.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1891 Cco-Chr6:29090685 Cco10g0149 Cco-Chr10:1434337 0.00E+00 dispersed
Cco05g2787 Cco-Chr5:35639349 Cco06g1891 Cco-Chr6:29090685 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g717 . . Bda06g00586 . . . . . . . Cma10g00135 Cma11g00105 Car10g00127 . Sed08g0139 . Cpe04g01547 Bhi02g00424 Tan09g2229 Cmetu02g0557 . Hepe09g0190 . . Cla06g01651 Cam06g1835 Cec06g1886 Cco06g1891 Clacu06g1795 Cmu06g1737 Cre06g2555 . . . . . . . . . Blo15g00275 . . Bpe07g00827 . . . . Cmo10g00141 Cmo11g00107 . . . . . Cpe18g00836 . . . . . . . . . . . . . . Lsi06g01540 Csa01g00164 Chy02g02567 Cme02g01956
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0191 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.0 1.5e-194 676.4
Cco07g0256 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 76.0 0.0e+00 1327.0
Cco04g2173 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1151.7
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1093.2
Cco06g1891 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.5 4.4e-303 1037.3
Cco11g1775 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.7e-249 859.0
Cco03g0723 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 5.8e-242 833.9
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1348.2
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1212.2
Cco10g0149 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1106.3
Cco04g2173 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cco07g0256 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 59.8 8.2e-314 1072.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1330.1
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1234.6
Cco10g0149 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.1 0.0e+00 1078.9
Cco04g2173 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.0e-312 1067.4
Cco07g0256 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.6 1.0e-307 1052.7
Cco10g0149 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1271.9
Cco04g2173 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cco07g0256 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1128.2
Cco05g2787 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1109.4
Cco06g1891 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1094.3
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1194.9
Cco06g1891 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1103.6
Cco04g2173 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.2e-290 994.6
Cco07g0256 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 2.1e-286 981.9
Cco10g0149 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 1.8e-285 978.8
Cco11g1775 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1483.4
Cco03g0723 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1362.8
Cco05g2787 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.2 4.6e-308 1053.9
Cco06g1891 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.1 1.6e-300 1028.9
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.5e-298 1022.3
Cco04g2173 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.5e-298 1021.5
Cco07g0256 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.2 2.1e-292 1001.9
Cco10g0149 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1378.6
Cco04g2173 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1136.3
Cco07g0256 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1127.5
Cco06g1891 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1108.2
Cco11g1775 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.1e-305 1045.8
Cco03g0723 . 99 940 Trehalose Biosynthesis Gene Families AT4G27550 59.2 2.2e-288 988.4
Cco11g1775 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1483.4
Cco03g0723 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1362.8
Cco11g1775 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.7e-249 859.0
Cco03g0723 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 5.8e-242 833.9
Cco11g1775 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.4e-194 676.0
Cco03g0723 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Cco11g1775 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.1e-305 1045.8
Cco03g0723 . 99 940 Trehalose Biosynthesis Gene Families AT4G27550 59.2 2.2e-288 988.4
Cco10g0149 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1378.6
Cco04g2173 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1136.3
Cco07g0256 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1127.5
Cco06g1891 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1108.2
Cco10g0149 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1271.9
Cco04g2173 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cco07g0256 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1128.2
Cco05g2787 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1109.4
Cco06g1891 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1094.3
Cco07g0256 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 76.0 0.0e+00 1327.0
Cco04g2173 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1151.7
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1093.2
Cco06g1891 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.5 4.4e-303 1037.3
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1194.9
Cco06g1891 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1103.6
Cco04g2173 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.2e-290 994.6
Cco07g0256 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 2.1e-286 981.9
Cco10g0149 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 1.8e-285 978.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1348.2
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1212.2
Cco10g0149 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1106.3
Cco04g2173 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cco07g0256 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 59.8 8.2e-314 1072.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1330.1
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1234.6
Cco10g0149 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.1 0.0e+00 1078.9
Cco04g2173 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.0e-312 1067.4
Cco07g0256 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.6 1.0e-307 1052.7
Cco05g2787 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.2 4.6e-308 1053.9
Cco06g1891 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.1 1.6e-300 1028.9
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.5e-298 1022.3
Cco04g2173 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.5e-298 1021.5
Cco07g0256 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.2 2.1e-292 1001.9
Cco01g0191 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.0 1.5e-194 676.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91