Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1891 ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGTTATCATCCACGGATATGTTGGATTTTCCTCATACACCAAGAACGGTTCCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAGCGATTTGGAAGTTTCCTCATCTAAATGCAGAGGGAGAAAAGTTATAGTGGCAAATTTTCTCCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAAATTCAGTTTTGATGAGGATTCAATTTTGCTTCAGCTGAAGGATGGCTTCTCACCTGATGTAGATGTTATATATGTTGGATCATTAAAGGTCGATGTTGATGTCCGAGAGCAAGATGAGGTTTCTCAGAAACTGCTGGAGGAATTCAACTGCGCACCGACTTTCATTCCTGCATACCTTCAGAAACAGTACTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTATCACGGATCTCGCTTTGATCGACATCTCTGGCAAGCGTATCTTTCAGTCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATCTTGAAGAAGATTATGTCTGGATTCATGATTATCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATTAAGCTCGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAACGTAGATCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGTGGATATCTCACGCTCGAGTATTTTGGCCGCACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATAGGTCGACTTGAATCTGCATTAAACCAACCGCACACTTCAATGAAGGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAGAAACTTATTCTTGGTGTTGATGACATGGACATCTTTAAAGGTATCGGTCTGAAGTTATTAGCTATGGAACAGCTCTTGAAACAGCATCCAGAGTTAAGGGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGCAATGGGAATGATGTCCAGGAAGCAAAGCGGGAAACTTATGAGATAACCAAAAGGATTAACAAGGTTTTTGGTTGTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCGTATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATGAACTCTTGGAAGTCTCCCCGAATTCACCTCGTACCAGCACGATTGTCGTGTCCGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCCTGGGATTTTGATGCCGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAAAAGCAACTGAGGCACGAAAAGCATTACCGATATATTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCACAAGATTTGGAGCGAGCATGCCGAGAACACTACAGTAAACGATGCTGGGGCATTGGTTTTGGTTTAGGTTTCAGAATTTTGTCACTCTCTCCAAGTTTCAGGAAGCTTTCCATTGAACACATTGGCTCTGCATATAGAAGCGCCTCTAGGAGGGCAATATTTCTGGATTACGATGGGACTGTGGTTTCTGAAACTTCGTTGGTTAAATCTCCGTCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATTCAAAGAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCATGGTTCGATTTGTGTAAGAATCTAGGTATTGCTGCTGAACATGGATACTATTTGAGGTGGAATAAGGATTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTTTGTTGGAAAAGGATCGCAGAACCAGTGATGAAACTATATACTGAGGCCACCGATGGCTCATACATTGAGACCAAGGACAGTGCGTTGGTATGGCACCATCAAGACGCTGACCCTTATTTTGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTAGTTGTTAAAAGAGGTCAGCAGATCGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAACTCGAATAAAGCACCGGACTTTGTGTTGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAGAGCATATCTAGCACAAGCTATAGCTCATCCCTTGCCAGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGATGATACCACCGACGTTTTGACCTTGCTTCAAAGCCTGGCCACCCCTTCTACACGTAAACTGAGGCCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATATCAAACTGGAGAACAAACCTTTACTGAGTCGGGATCGTCTCGATTGCCCGACTCTTTGCCACAGTTACTGGTGCCAATGGGTTGAATTCAGGAAGATAATTGCTTGGCTAGAATATAGTGAACAGGCGAAGAAGAGGCATCTCCATGTTCTTGATTACGGTGTTTTAGGGAAAATCTTCTCGTTCTTTGTTTACATATCGAACGAGCATGAAGACACCCGAAATCCTCACTTACCTGCCATTGATGAGCAACAAGATGGCTTTTGGATCTGA 2835 42.57 MLSSSCLSLLELSSTDMLDFPHTPRTVPRVMTASGIFSDKDSDLEVSSSKCRGRKVIVANFLPLHAKKDPDSGKWKFSFDEDSILLQLKDGFSPDVDVIYVGSLKVDVDVREQDEVSQKLLEEFNCAPTFIPAYLQKQYYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSVNKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNVDLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHIGRLESALNQPHTSMKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLKQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGCPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDELLEVSPNSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYISSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLVKSPSPEVISIINNLCTDSKNTVFIVSGRGKDSLGSWFDLCKNLGIAAEHGYYLRWNKDSDWEVSPLAENFCWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSTSYSSSLASPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSFETRVLFEDDIKLENKPLLSRDRLDCPTLCHSYWCQWVEFRKIIAWLEYSEQAKKRHLHVLDYGVLGKIFSFFVYISNEHEDTRNPHLPAIDEQQDGFWI 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29090685 29094416 - CcPI632755_06g018910.1 Cco06g1891 182491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1891 944 CDD HAD_TPP 587 826 - -
Cco06g1891 944 SUPERFAMILY HAD-like 586 834 IPR036412 -
Cco06g1891 944 Gene3D - 585 700 IPR023214 -
Cco06g1891 944 Gene3D - 715 844 IPR023214 -
Cco06g1891 944 CDD GT20_TPS 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco06g1891 944 NCBIfam trehalose-phosphatase 583 834 IPR003337 GO:0005992(InterPro)
Cco06g1891 944 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Cco06g1891 944 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
Cco06g1891 944 FunFam Trehalose-6-phosphate synthase 2 670 748 - -
Cco06g1891 944 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Cco06g1891 944 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Cco06g1891 944 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco06g1891 944 NCBIfam HAD-IIB family hydrolase 587 788 IPR006379 -
Cco06g1891 944 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 835 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco06g1891 944 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 715 846 - -
Cco06g1891 944 Gene3D Glycogen Phosphorylase B; 47 306 - -
Cco06g1891 944 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0005992(InterPro)
Cco06g1891 944 Gene3D Glycogen Phosphorylase B; 307 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1891 Cco-Chr6:29090685 Cco10g0149 Cco-Chr10:1434337 0.00E+00 dispersed
Cco05g2787 Cco-Chr5:35639349 Cco06g1891 Cco-Chr6:29090685 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1891 K16055 - csv:101209676 1647.1