Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1893 | ATGTTTGTTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATATGCATAACATCGCGTATTCTCGATTAGGCGGACTTCACAAATCCCTTTCTCTCTACAGAAAAGTTCCATGGTGGGATCAAATTCTGAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTTCTCGTCACTTGCTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTCATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGCCTTGGCATCGTCGTCACTTTCTTTCGCACCATCGTCGATTTCTTCTCCTTGTTTCACATTCTCATGAAGTTTCGCACTGCCTTTGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGCGACCTCGTTATGGACCCTTCCGCCATTGCAATGCGCTACATCAAGAAGGATTTTCTCATTGATCTTGCTGCTACGCTTCCCCTGCCCCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCATCAGCAGCCCATGCCAACCACACTCTTGCATTCATTGTCCTCATTCAGTATGCACCCAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCTTATAATCTCCTTCTGTATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATGTAGCATCCATTCAACGTCAGGAAGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACCACTCATTCTCCTTCTTGCCAGCTTATTTTTCTGGACTGTGATAGTTTGGCTTGGCAAGAACGACAAGCTTGGCTAAGAGTTACTCATGTTCTTACAAACTGTGATGCACTAAACGATGAAAAGAAATTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTTTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGTTTAAAGAGTTTGAGTGCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTGTGATTTGCTCCTTGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGAGCTATCTGCAATCCACAACAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTACCCCTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCGATCTTGCGCTCTTTACCTCTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTTGCACAAATGGACGGTCAACTATTGGATGCCATATGCGAGCGTCTCGTCTCGTCCTTGAATACCAAAGACACATTCATAACCAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGTCAGCTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTTTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGTGAAGAACTGCTAACATGGGCCTTAGTCCCATCCCTTAGCCTTAGCTTCCCCTCCTCAACTCGAACTGTGAAGTCGCTGACCGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAGGAGCTTTATTACACAACAATATTGGACCAAGATTCTAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACTAGTGGCTCCAAAAAAAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTAACCAAAAACTGGCTGTACTTGACAACGATGTCACCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGAGAATTGA | 2136 | 43.96 | MFVWKKKKKKKKKKKKKKNMHNIAYSRLGGLHKSLSLYRKVPWWDQILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVVTFFRTIVDFFSLFHILMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYIKKDFLIDLAATLPLPQIVIWFVIPALKNPSAAHANHTLAFIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQEECWKIECRKEMNTTHSPSCQLIFLDCDSLAWQERQAWLRVTHVLTNCDALNDEKKFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDGQLLDAICERLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSLSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDSSHGSEMEGEGDGETSGSKKNSKNKAQNLGITMLASKFAANTRRGVNQKLAVLDNDVTSLKMPKLFKPDEPDFSAFQDEN | 711 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29123325 | 29128561 | + | CcPI632755_06g018930.1 | Cco06g1893 | 182493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1893 | 711 | MobiDBLite | consensus disorder prediction | 634 | 650 | - | - | |
Cco06g1893 | 711 | ProSiteProfiles | Adenosine to inosine editase domain profile. | 52 | 108 | IPR002466 | GO:0003723(InterPro)|GO:0004000(InterPro)|GO:0006396(InterPro) | |
Cco06g1893 | 711 | SMART | cnmp_10 | 457 | 588 | IPR000595 | - | |
Cco06g1893 | 711 | Gene3D | Helix hairpin bin | 383 | 447 | - | - | |
Cco06g1893 | 711 | FunFam | Cyclic nucleotide-gated ion channel 1 | 455 | 573 | - | - | |
Cco06g1893 | 711 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 457 | 587 | IPR000595 | - | |
Cco06g1893 | 711 | SUPERFAMILY | cAMP-binding domain-like | 386 | 582 | IPR018490 | - | |
Cco06g1893 | 711 | PRINTS | EAG/ELK/ERG potassium channel family signature | 352 | 363 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cco06g1893 | 711 | PRINTS | EAG/ELK/ERG potassium channel family signature | 420 | 427 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cco06g1893 | 711 | PRINTS | EAG/ELK/ERG potassium channel family signature | 326 | 343 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cco06g1893 | 711 | PRINTS | EAG/ELK/ERG potassium channel family signature | 370 | 379 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cco06g1893 | 711 | PRINTS | EAG/ELK/ERG potassium channel family signature | 113 | 122 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cco06g1893 | 711 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 39 | 681 | - | - | |
Cco06g1893 | 711 | MobiDBLite | consensus disorder prediction | 632 | 654 | - | - | |
Cco06g1893 | 711 | CDD | CAP_ED | 457 | 588 | IPR000595 | - | |
Cco06g1893 | 711 | Pfam | Ion transport protein | 58 | 384 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco06g1893 | 711 | Gene3D | - | 62 | 381 | - | - | |
Cco06g1893 | 711 | Gene3D | Jelly Rolls | 455 | 575 | IPR014710 | - | |
Cco06g1893 | 711 | SUPERFAMILY | Voltage-gated potassium channels | 50 | 379 | - | - | |
Cco06g1893 | 711 | Pfam | Cyclic nucleotide-binding domain | 480 | 569 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1484 | Cco-Chr6:25346448 | Cco06g1893 | Cco-Chr6:29123325 | 9.50E-230 | dispersed | |
Cco06g1893 | Cco-Chr6:29123325 | Cco10g1454 | Cco-Chr10:27664234 | 2.70E-181 | dispersed | |
Cco10g1423 | Cco-Chr10:27327317 | Cco06g1893 | Cco-Chr6:29123325 | 6.50E-264 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1893 | K05391 | - | csv:101209760 | 1245.72 |