Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1894 ATGGCTGCTCGTAGAGGAATCTGTTCTTTAGTCTCTCGTTCTCTCTTATCTTCTTCCTCTGCTGCTTCTTCTTCTTCTTCTGCTTATGGGTTTAGTTCTTTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCAAAGAAGAGGGAATAGATTTAGCACGTCTGCTTTGGCAGAGGAGGAACTCATCACTCCTCCTGTTCAAATCAATTACACTCAGAATCTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGAAAAACGTTTCCGACTTACGATCCTCGCACTGGAGAAGTGATTGCTCATGTTGCCGAGGCCGATGCCGAGGATATTAACCGTGCGGTATCAGCAGCTCGAAAGGCATTTGACGAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCAGATTTGATTGAGAAACATATGACTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCAGTTAAATCCGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCTGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTAGCAGGACAGATAATTCCATGGAACTTTCCTCTCATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCCTGTGGCAACACTGTTGTCCTAAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAATTATTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTCGTTTCGGGCTATGGTCCGACGGCCGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCAACGAGCACAGGAAAAGTTGTACTTGAATTGGCAGCGAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCCGGATCTCGTACTTTTGTTCATGAGCGTGTATACGACGAATTTGTCGAAAAATCGAGGGTACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGTGGTGGTAGACTTGGGTCCAAGGGATACTTCATTGAGCCAACAGTTTTCTCAAATGTTAAGGACAATATGTTGATAGCGAAAGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAGAGGGCAAACTCTACTCGTTACGGTCTAGCTTCGGGAGTTTTCACATCGAACATCGACACAGCCAACACGCTAACACGAGGATTGAGAACAGGAACCGTGTGGCTCAATTGCTTTGACATCTTCGACGCTGCAATACCGTTTGGTGGGTATAAAATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAGCTACTTGCAAGTAAAAGCTGTTGTTACGCCTCTCAAGAATCCAGCATGGTTGTGA 1656 44.75 MAARRGICSLVSRSLLSSSSAASSSSSAYGFSSFLQSHGRVSRFQRRGNRFSTSALAEEELITPPVQINYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDEGPWPRMTAYERSRILLRCADLIEKHMTELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRVRAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDNMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANTLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29133337 29136512 + CcPI632755_06g018940.1 Cco06g1894 182494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1894 551 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 345 356 IPR016160 GO:0016491(InterPro)
Cco06g1894 551 FunFam Mitochondrial aldehyde dehydrogenase 2 323 512 - -
Cco06g1894 551 Pfam Aldehyde dehydrogenase family 79 541 IPR015590 GO:0016491(InterPro)
Cco06g1894 551 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 317 324 IPR029510 GO:0016491(InterPro)
Cco06g1894 551 CDD ALDH_F2BC 68 543 - -
Cco06g1894 551 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 54 543 - GO:0004029(PANTHER)
Cco06g1894 551 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 75 343 - -
Cco06g1894 551 SUPERFAMILY ALDH-like 67 545 IPR016161 GO:0016491(InterPro)
Cco06g1894 551 FunFam Aldehyde dehydrogenase, putative 513 539 - -
Cco06g1894 551 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 323 512 IPR016163 GO:0016620(InterPro)
Cco06g1894 551 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 85 541 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1789 Cco-Chr2:30762913 Cco06g1894 Cco-Chr6:29133337 6.90E-246 dispersed
Cco06g1169 Cco-Chr6:20784425 Cco06g1894 Cco-Chr6:29133337 7.60E-162 dispersed
Cco06g1894 Cco-Chr6:29133337 Cco06g1872 Cco-Chr6:28937996 1.30E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1894 K00128 - csv:101209430 1004.97