Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1895 ATGAAAGAGAACAATGATGGATTTGTGCGTGCGGATCAGATTGATCTCAAGAGCTTGGATGAACAGCTTGAGAGGCATCTTAGTAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGATGGTGGTAATAGCTTTCTCACTTCTGCACCTATCGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGACCGGCAGGAGTGGGAGATCGATCCGTCCAAATTGATTATCAAAAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCCGCCTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGTTTATAGGGGCAACGATGGGCTCGGCAGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCTGGAGGCGCCCTTAAATCTTATCTCATAAAAAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTCGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGGACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGTAACCCATATAACAGGAAGTGTGATGTGTATAGTTTCGGCATCTGCCTGTGGGAAATTTATTGCTGTGATATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTTGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGTTGCTGGGATGCGACCCCAGACAAGCGGCCTGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGACCCTAA 1140 46.67 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGGNSFLTSAPIARSRSTKVAAKDRQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29138663 29141929 - CcPI632755_06g018950.1 Cco06g1895 182495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1895 379 FunFam Kinase suppressor of Ras 1 65 160 - -
Cco06g1895 379 FunFam Serine/threonine-protein kinase HT1 176 361 - -
Cco06g1895 379 MobiDBLite consensus disorder prediction 30 50 - -
Cco06g1895 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 55 351 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cco06g1895 379 CDD STKc_MAP3K-like 82 350 - -
Cco06g1895 379 Coils Coil 16 36 - -
Cco06g1895 379 Pfam Protein tyrosine and serine/threonine kinase 78 350 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 MobiDBLite consensus disorder prediction 30 44 - -
Cco06g1895 379 Gene3D Transferase(Phosphotransferase) domain 1 177 366 - -
Cco06g1895 379 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 SUPERFAMILY Protein kinase-like (PK-like) 57 350 IPR011009 -
Cco06g1895 379 Gene3D Phosphorylase Kinase; domain 1 65 159 - -
Cco06g1895 379 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1895 379 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1895 Cco-Chr6:29138663 Cco09g0698 Cco-Chr9:6247296 2.30E-147 dispersed
Cco10g1412 Cco-Chr10:27205296 Cco06g1895 Cco-Chr6:29138663 6.50E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86947 PF07714 PK_Tyr_Ser-Thr 3.70E-63 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1895 - - - 0.0