Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1898 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCCGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCCGCTGAGAATGGGTCTGCCTATGACACCACTGTTCTGGAGACGGAACGGTCTCCCCTGAAGGATAAGTGTCCACATCTTGCCATTTGCAAATCCCGGCAACTGTGTAATAGTAAAGCTCGAACTACCCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTCGTTCAATGCACACTTCATTCTCCACCAGGATTGTGGCAATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTTATTGGAGAAAGTGATTGGTCTGGTTTGTATGGCTTCCAATTTTGGCCACAACATCTCCAAGGAGCCCCACCATATGAAACCATAA 1458 46.3 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAYDTTVLETERSPLKDKCPHLAICKSRQLCNSKARTTRLFSAACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSRSMHTSFSTRIVAMTEWSSLYERMWLLEKVIGLVCMASNFGHNISKEPHHMKP 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29172697 29178357 + CcPI632755_06g018980.1 Cco06g1898 182498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1898 485 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cco06g1898 485 SUPERFAMILY RING/U-box 217 284 - -
Cco06g1898 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cco06g1898 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 356 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cco06g1898 485 Pfam Ring finger domain 234 276 IPR001841 -
Cco06g1898 485 SMART ring_2 235 275 IPR001841 -
Cco06g1898 485 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1898 Cco-Chr6:29172697 Cco10g0643 Cco-Chr10:8887994 3.80E-09 dispersed
Cco01g1455 Cco-Chr1:26310369 Cco06g1898 Cco-Chr6:29172697 1.80E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1898 K16284 - csv:101208939 723.391