Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1901 ATGTGTAATAAAGGAAGCTTTTCGAAACAGAAAAAAATGCGAAAATCGGCAGTTGCAATTGCAGCCGTCGCCGGTGGGAGAGAGGTCGCGATTCTGCGTTCTCTGCTGATTTTGAACAATTGTGAGATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGCGTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTCGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGCTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTTGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCAATCACCATCTGCAGATAAGAAGGAGAAGGCTGAAAATACCCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGGAAAAAAGCTCCTCACCTGCAATTGGACCACGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGTTTGTTGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTTGAAAAAAAATAGTCCAGTTGCTGCTCAATTAAAGAAGCAGAAAGATTCACCTTTGAGGGGCTCAAAAATGCAGAATGGAATTGAGGATTTCGATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGGAATTTAGTTTCCTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAACTTAGAACTTGTTATGTGTTTGCACGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCAATACCTCTATTGGAGCATTCCATCGAGATTCCTGCCATCAAGGAAGGGCATGAGCATGCACTGGCCAAATTTGCAGGGCACATGCAATTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCTCATGTTCAAGCCTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCGCTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGCATTGGAGATTCATACTTATCCTTGTCCCGCTACGATGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACTAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCAGGGATTCCTCCAGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGATGTTGAGCAAGCAGTCAAATTATTACACAGGGCATTGAAGATATATAATGATGCCCCCGGACAGCAAAATACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGACTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGTGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAACGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAGCAAGAATATGGACCTTATCATCCCGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATACGATGCAATTGGCAGGTTAGATGATGCAATTGAAATTTTGGAATATGTTGTTGGCATGCGGGAGGAAAAACTTGGAACAGCCAATCCCGATGTCGATGATGAGAAGAGGAGGTTGTCTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTTGAGACTCTTCTCGATGCCAATGCTCATCCTGTAAACAGTAAAGGTTTCTTCCACTCACCATTCTTCCGATCGCCGACTGCAAGTACAAGATATCGTGTATTTGTATCTGCAACTATGGTTGAAAAACCTTCTAGTTCGTCATCTACTCTTGTTGATCAGCCAGTTGTTCCAGGAGACGTGGTTCTCGACCTCTCAAACATGGCCAACGAGACAATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCTGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGTTGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCTGAGTTGGCATGTACTGATGTTTTTGGTTGTGATAAAATTCACGTGAGTATCATTTTGCTTTGTGTAGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCATGTCCAGTTCTTGAATTTCTTGGAAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTCAATTCCGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGGGACTCTGTCTGGGGTTCAGCAGAGAATCATGGTGGACAAACTCCTTAACAATTTAAAGCTGTCAAGGGCTCCCATGGCGGCAACCCAATCTGCTCCTCCTTCTTCGAATGACGATAACTCCCAGAATTCAGTTGAAACCTCGAGCATCGGTGTCGGTTTCCAGTTTTCTCCTCATGTGAGTATTGACGGAAGGTTGGTGTTTGTATCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCACCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAACGCTGTAAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGACGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAATCACAACCCTCGACACAATCTCTTCAACCAGTTGCTGCTGCCACTCCTCTTGCTGGTGGTGAATCTCGTGTGGGTACTGTCGCACGGTCTAGATTCCATTGGTCACATGCCATTCTTGCAGTAGGTGTACTGGCCGTTTCAGGTGCTGGAACAGTTGTAGTATTCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGTAAAGTTGTATTAGAAGATGATGACGTTGAGAAGAAAATAAATTTAAAACCAAGTGCAGCAGAGGAAGCAGCTGCTGCCGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGCCAAGAGATGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTATGGAAGAACTACTACCGTTGATCAAGAAGATTATCGAATTACTCCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGTTGGACCTTAGCTTCCAGTCAGCTACACCTGCCACACCTGTTGAACCCTCCGTTGCACCGCATCCCAAGTCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATAGACGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGCCTTTTTCCCTCAGTCTCAAGATGATGCTGGTTTGAATTCCTTGGTACAAAACAATGGTGTGACTTACGAGAATGATAACCCTTCAGTGCCTTGGTGGCAGAAGAGAAATGTTAACATTACTGAGATCGACAATAATGAGTTGAAAGTAGGCTCTTCCAATGGTCTCTCTGCTGAGAAACCAGTTCAACGTGCATGGGTTCCTCCTCAACCACCACCTGTCGCATTGCCAGAAGCTGCCGAAGCCATCCGAAGGCCAAAACCTATCCAGAAAGAGCAGTTTACTGACGAACAGTTAGCAACACAACCAAATGTAACTGATGAGTTGCAGAAAGCCACAAAAATTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTAGGAGTGAGCTCAAGTGAGATACAAGTGGAAGATAGCAGCTCTGGAGGACAATGA 4812 44.53 MCNKGSFSKQKKMRKSAVAIAAVAGGREVAILRSLLILNNCEMPGIVMDEINEERAVNKHNGSSIHMEESYGNKSPRSGLSVQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVEKPEHDFPSDSMNQSPSADKKEKAENTQPGSSKRLSSGKKAPHLQLDHETSPKSSPRGKGLLDKPPISRKNEKNLKKNSPVAAQLKKQKDSPLRGSKMQNGIEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNDVEQAVKLLHRALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYDSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKGFFHSPFFRSPTASTRYRVFVSATMVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFELGALLYVRVVKVNPGMNPELACTDVFGCDKIHVSIILLCVASGKAAGFGLLKDGYMFECSTGLSRMLLSSPACPVLEFLGKKLSFEIAVGLNGRVWVNSDSPSTTIVVSNAILNSGTLSGVQQRIMVDKLLNNLKLSRAPMAATQSAPPSSNDDNSQNSVETSSIGVGFQFSPHVSIDGRLVFVSAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQSQPSTQSLQPVAAATPLAGGESRVGTVARSRFHWSHAILAVGVLAVSGAGTVVVFKNSIIPRLKSWVRKVVLEDDDVEKKINLKPSAAEEAAAAAKAAAAAASDVAKASQEMLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKLDLSFQSATPATPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPAFFPQSQDDAGLNSLVQNNGVTYENDNPSVPWWQKRNVNITEIDNNELKVGSSNGLSAEKPVQRAWVPPQPPPVALPEAAEAIRRPKPIQKEQFTDEQLATQPNVTDELQKATKISESGGAIDYENLGVSSSEIQVEDSSSGGQ 1603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29201020 29215544 + CcPI632755_06g019010.1 Cco06g1901 182501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1584 1603 - -
Cco06g1901 1603 SUPERFAMILY Nucleic acid-binding proteins 869 977 IPR012340 -
Cco06g1901 1603 Gene3D Tetratricopeptide repeat domain 650 767 IPR011990 GO:0005515(InterPro)
Cco06g1901 1603 MobiDBLite consensus disorder prediction 123 146 - -
Cco06g1901 1603 Pfam Peroxisomal membrane protein PEX14-like, central 1236 1354 IPR054154 -
Cco06g1901 1603 FunFam Exosome complex exonuclease RRP40 807 872 - -
Cco06g1901 1603 FunFam exosome complex component RRP40 970 1053 - -
Cco06g1901 1603 CDD S1_Rrp40 870 971 IPR037319 GO:0003723(InterPro)
Cco06g1901 1603 SUPERFAMILY TPR-like 271 729 IPR011990 GO:0005515(InterPro)
Cco06g1901 1603 Gene3D Tetratricopeptide repeat domain 472 649 IPR011990 GO:0005515(InterPro)
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1061 1081 - -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 110 146 - -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1115 1134 - -
Cco06g1901 1603 Coils Coil 736 756 - -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 65 84 - -
Cco06g1901 1603 Pfam KH domain 974 1022 IPR004088 GO:0003723(InterPro)
Cco06g1901 1603 Pfam Pex14 N-terminal domain 1139 1183 IPR006785 -
Cco06g1901 1603 SMART tpr_5 361 394 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 485 518 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 527 560 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 695 728 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 570 603 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 611 644 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 653 686 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 SMART tpr_5 403 436 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 Gene3D - 806 872 - -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1587 1603 - -
Cco06g1901 1603 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 MobiDBLite consensus disorder prediction 158 257 - -
Cco06g1901 1603 ProSiteProfiles TPR repeat profile. 570 603 IPR019734 GO:0005515(InterPro)
Cco06g1901 1603 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 43 774 - -
Cco06g1901 1603 Pfam Family of unknown function (DUF5572) 1404 1452 - -
Cco06g1901 1603 SUPERFAMILY Ribosomal L27 protein-like 808 869 - -
Cco06g1901 1603 Gene3D - 873 947 IPR012340 -
Cco06g1901 1603 Gene3D K Homology domain, type 1 966 1053 IPR036612 GO:0003723(InterPro)
Cco06g1901 1603 Pfam Tetratricopeptide repeat 418 468 - -
Cco06g1901 1603 Pfam Tetratricopeptide repeat 483 559 - -
Cco06g1901 1603 Pfam Tetratricopeptide repeat 655 721 - -
Cco06g1901 1603 Gene3D - 1131 1197 IPR036388 -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1423 1447 - -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1188 1217 - -
Cco06g1901 1603 FunFam Peroxisomal membrane protein PEX14 1131 1193 - -
Cco06g1901 1603 Pfam Exosome complex component RRP40, S1 domain 871 945 - -
Cco06g1901 1603 CDD KH-I_Rrp40 973 1051 IPR049469 -
Cco06g1901 1603 MobiDBLite consensus disorder prediction 198 212 - -
Cco06g1901 1603 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 973 1055 IPR036612 GO:0003723(InterPro)
Cco06g1901 1603 Gene3D Tetratricopeptide repeat domain 314 471 IPR011990 GO:0005515(InterPro)
Cco06g1901 1603 MobiDBLite consensus disorder prediction 1183 1217 - -
Cco06g1901 1603 FunFam Exosome complex component RRP40 873 951 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1901 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0266 Cco-Chr6:2887339 Cco06g1901 Cco-Chr6:29201020 9.70E-145 transposed
Cco07g1213 Cco-Chr7:25974833 Cco06g1901 Cco-Chr6:29201020 2.50E-196 transposed
Cco01g1456 Cco-Chr1:26321588 Cco06g1901 Cco-Chr6:29201020 2.60E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48