Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1911 ATGGCTCACAGTCACAGTACCAGTACCACAGCCTACGCCCTACCCCTCTCTCTCTCTACGCCCCTAAATAATTCTTCCATTTTTCTCTCTCCGCTGTCGACCATGGCGGATCTTTACGGACTCCATCCCCTCGCCGATAACTCTTACCAGTCATCTTCAGCGACGACGTTGGGTAGCTTTCCTCTTCTTGCTAATTCTCCGATGGCTTCTGCAGATTATTCTCATCTACTTCCTGCTTTTGAATCGGAATATTTGCGGACGGTTTCGTCGGCCGCCTGCGACACCGTTGCGGCGGCGGCTGAGATTGAAACAGCGCGAGCTAATTCCGAGTACTCCGCCGGTGTAATTCGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAACTCGTCGATGCGTTCGTGAACTGCCAAAAGGTCGGTGTACCGCCGGAGTTCGCTGATATTCAAGACCAAAACAACCGTAGAAGTGATATCGGTGAAGAAACTTCCGGCGTTTCAAATTGCTTGGGTGTCGATCCCGAACTCGATGAGTTCATGGATACTAGCCAAAACGAGTTAGATCTCTCCCAGTCCTTCATGGAAGCATCTTCCTTTCTCAACAACATGGGAATGCAGTTAAACGTGCTTTGCAATAACGATGAAGCTGCTTCGAAAGAGAATATAAGCGCCGGAGAAGTAGAATTACAAAACTCTCTTGTGGTTCCGGGAAATGAAGATCGCAAACTGAAGGAACGACTTTTGCGGGAGTACGGTGGTCATATTAGTAGCTTAATGCAGGAATTCTCAAAAACTAAAAAGAAGGCAAATCTGCCGAGAGAAGCCAAACAGATCCTGCTTCACTGGTGGAACAGCCATTCCCAGTGGCCATATCCCACTGACACAGAAAAAGTTGAGTTGGCCGAGTCGACAGGCCTAACCCAAAAACAAATAAACAACTGGTCAGGCATCGACGTTGATATGACTGTAGGAAACGATTCATTATGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGTGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCAGCGATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGACCGAGGTGGTCGTGTTATTATATTTGAGAGAAGGGACGGGAAGGATACTTCAAAAAACTACCCTACACGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGCATGTCACCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATCGAAGAGAAGATTAATAAAATAAAGTGGTGTGTGTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGAAAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAGGTGAAAACTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGGAATCAGTTTCACTAGTGAACAAGACAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAATATGGCAACGAACAAGGTAGCCTCTAAAGACATTCATGGCATGATTGCTGATCAAGACAACACTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCACGATTATAATATTAACTCCATTTCTAACAATAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCATTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATGATAGTGCAATTCTGTTACGAACTGAAGAACTGAATCAACCAAAATCATTTTTTGCGGAGTTAATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCGGTTGCAGTTTTCAAGATCCACGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGAACTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCAGAAGGGATCACTACAGAAGTGGGAAAGATTCCTGATAGGAAGCCACATCTCCAAACCACTCGGCGGGCGAGAAGATCGTCCTTGAGCAATTTGACACGTGATTTTTTTCGGCAGGGCAATGAACATTCAAACCCGGACAATAACGAAACTTCTGTTGACCTGAACTCCAAGTTACTACATTCAGCGTGGCACCCATCCGAAAATTTAATCGCATGTGCTGCTGGAAGTGAAGTTTTACCTAGGGTTGCAAATTCCTCTGAAGAGGTAGAAGGCGAAAGCGAATTGCCAAAAAATTTGCTGAAGCTCGAAACGGGTCGTCTTCAGGGGAATCTCCTCAGTCTCTCCAGGAGGTTTGCCATCATAAATGGCAATGAAACCTACCTATGTGTCATTCCAAAGATGCATGGTGCTAAATTTGTGGGTGATTAG 2664 44.11 MAHSHSTSTTAYALPLSLSTPLNNSSIFLSPLSTMADLYGLHPLADNSYQSSSATTLGSFPLLANSPMASADYSHLLPAFESEYLRTVSSAACDTVAAAAEIETARANSEYSAGVIRAKIASHPLYPKLVDAFVNCQKVGVPPEFADIQDQNNRRSDIGEETSGVSNCLGVDPELDEFMDTSQNELDLSQSFMEASSFLNNMGMQLNVLCNNDEAASKENISAGEVELQNSLVVPGNEDRKLKERLLREYGGHISSLMQEFSKTKKKANLPREAKQILLHWWNSHSQWPYPTDTEKVELAESTGLTQKQINNWSGIDVDMTVGNDSLCAPLEWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERRDGKDTSKNYPTRNKLEQLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNEKTIKLWKVKEHKVKTVKEMNPNRFVSSENALLAGISFTSEQDKVSLSNGCHWNLSENMATNKVASKDIHGMIADQDNTSRRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDDSAILLRTEELNQPKSFFAELISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGTYSNQLRMFSYGSGSSEGITTEVGKIPDRKPHLQTTRRARRSSLSNLTRDFFRQGNEHSNPDNNETSVDLNSKLLHSAWHPSENLIACAAGSEVLPRVANSSEEVEGESELPKNLLKLETGRLQGNLLSLSRRFAIINGNETYLCVIPKMHGAKFVGD 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29344686 29367777 + CcPI632755_06g019110.1 Cco06g1911 182511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1911 887 Gene3D - 245 316 - -
Cco06g1911 887 Pfam ELK domain 242 262 IPR005539 GO:0003677(InterPro)
Cco06g1911 887 SUPERFAMILY Homeodomain-like 263 313 IPR009057 -
Cco06g1911 887 Pfam Homeobox KN domain 281 313 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco06g1911 887 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677(InterPro)
Cco06g1911 887 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 349 516 - -
Cco06g1911 887 ProSiteProfiles 'Homeobox' domain profile. 261 313 IPR001356 GO:0003677(InterPro)
Cco06g1911 887 SMART KNOX1_2 114 158 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1911 887 SMART WD40_4 421 461 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 SMART WD40_4 534 573 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 SMART WD40_4 344 379 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 SMART WD40_4 577 624 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 SMART WD40_4 643 681 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 SMART WD40_4 708 739 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 Pfam WD domain, G-beta repeat 538 573 IPR001680 GO:0005515(InterPro)
Cco06g1911 887 SMART ELK_2 241 262 IPR005539 GO:0003677(InterPro)
Cco06g1911 887 SMART HOX_1 263 321 IPR001356 GO:0003677(InterPro)
Cco06g1911 887 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 421 435 IPR018067 -
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 545 572 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 658 685 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 630 657 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 686 711 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 573 600 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 601 629 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 437 465 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 712 738 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 797 826 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 358 378 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cco06g1911 887 SUPERFAMILY WD40 repeat-like 352 810 IPR036322 GO:0005515(InterPro)
Cco06g1911 887 Gene3D - 631 824 IPR015943 GO:0005515(InterPro)
Cco06g1911 887 Gene3D - 386 630 IPR015943 GO:0005515(InterPro)
Cco06g1911 887 Pfam KNOX2 domain 169 210 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1911 887 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 331 823 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(PANTHER)|GO:0019888(InterPro)
Cco06g1911 887 SMART KNOX2_2 165 211 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1911 887 Pfam KNOX1 domain 116 148 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g1911 887 CDD homeodomain 265 313 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1911 K04354 - - csv:101206601 928.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1911 Cco-Chr6:29344686 Cco09g0048 Cco-Chr9:410296 3.20E-163 dispersed
Cco05g2818 Cco-Chr5:35868572 Cco06g1911 Cco-Chr6:29344686 1.20E-57 wgd
Cco06g1911 Cco-Chr6:29344686 Cco08g1957 Cco-Chr8:30384952 3.40E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36