Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1916 ATGACATCAAGTATGTTGAGTGGAGAAAGAAGGTGGACATCAGCCAGACGAGGTGGGATGACAGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATAAACTTACCGAGTCAAAGGTTAGAAAACCATGGTTTGGACCCTAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCGCATCTGTTTCTCCAAATACAGATAGTGCTTCTGGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGCACTCGTCCGTCAACAGCTGGCAGTGACAGGTCCCACGAACCTCATGCTAATGCGTGGGGACCAAGTTCTAGACCATCATCTGCATCTGGACCTGTGACATTAAGCCATGCATCACTCACATCCTTGCGCCCTCACAGTGCCGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGGAACGATGCCATGCAAGAGTGATGAGTTTTCTTTGACGTCTGGAGATTTTCCTACACTGGGTTCAGAGAAAGAAAGTGTAGGAAAGGATGCTGAGTCACAAGATAATAGATCTAATGGAGGAGCTACGATGAAAGAGAGGACTGAAACTTCGGCAATTGATGATCCTAAAAATGTGACCACAAGTGTTGCAAGTGCTAATTCCTGGAGAAGTGATAATCTTCCACACAACGATGATGGATCTAGGCCAAATGTAGAGAAATGGCTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACATTATGACGCCTGGCATGGTTCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCTCCATATCGAACTCCAGTTGCTCCTGGTAATTTCCCGCTGGATCCATTTATGTATTATCCTCCACAGATTCCCCCTGGTGGCCTTCCCAATCCCCAGCCTCCTCATGGAACTGGACCCAGGGGACACCATCCTAAAACTGGAGATATATACAGACCACCTATGCATGATGGTTTTATTCACCCCCCAGCCATGTCAATTAGACCTGGATTTTACCCGGGTCCAGTTACCTATGATGGATATTTTCGACCTCCCATGGGCTACTGCAATTCAAATGATAGAGATGCTCCATTTATGGGACTGCCTGCTGGGCCTAGTGGGCCTAGTGGGCCTGCTGGACCTGCTGTTTACAACAGGTTCTTGGGCCAAGGCCAGAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCTAGTGGAAAGGGTATGGTTCCAGAACAAGCAGAATCTGGTCTTCCTTGTGATAATCAAGGACAATACAAGGTTCTTCTGAAGCAGCAGGGAAATGTAAATGGTAAGAACGAAGAAAAAAATATGATAAACTCAACAACCACTAATCAATTGATTCTTGAGAAGGCTGAGCAACAGAGGGTGTCTCCATGGGAGAATGACTGGGAACATAAAAAGGAAGTTGATTTGAGGAGAAGAAAATTGGGGGTGGAACCGTATTCTCAGGCTTCTGCCGACCAAGAAGCTCAATCTTCTGAAAGTATGAAAGCCAAATCTCATGGAAACACGAGGACTGGTGATGGGTTACTAGAAAAATCGGATGCTGCTTCTTCTGGTTTCTCTGAAGTTCCCAAATCACTGGTTACTTCTGCAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGATTAAATGCAAAAGCACGGGCTTCTGATGTGCGACGTGATGGTGCCCCTATTTGTAGCAGGGATGAGCCAGATGAGTTTCAATCTGATGATAAGCACTCTGATCCTTTTGTTGCCCGTGAAGTGGGTGTGAGTGCTGTTTTTCCTGAAAACAGAGATTTTAAAGAAGTCGTAGATCCTGCCTCCAGTGAATTAAGCTTGTCCACTGTAGATAGGAACGTTAAATTTCATGGTGGAGCACCTGTCCACAGGAGGCCTAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCCGAGGAAAAGGCAATGCACAGGAGGTAGATGGTTGGCATAAAAGACCTCTGTTGGACTCCCCAGGCATGATGGCAACTCCCAACCAGGAAAGTTCGGTGCTTGACAGGGACCACAATGCTTTAGGAGCTATCAATAAGGCCAAGCCATTTTCTTCAGATAGCCTTGGAGATGGGCCTGCCCCATCCATAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAATTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAGGGCTAGGGCCTTGGCAAAACTTGAAGAGTTGAACAGACGTACAGTAGCTGGGGAGGGGCCAAATCAGTGGTCTAACACTAATAATGATGCTATAAGAAATAAGATAGAAGAACCTCGCAATCCCAGTAATTCAAGAACGCTTGGTACTATATCTGGAGAGCATACCACAGTTTCTGATCTACATGTGGCTACTAATGATAGCGAGTCAACTGTGGGCACTGATAAAAATTCTCCCATTGTATCAGGAGATACATCATCGAAGAAACCAAGTAATGGCAATAAGGAACAGTTTGTGGCACATAATGAATTGAGATCTTTGGAGCAGGAGGTAAGTATTTCTGATGCTGCTCAAAATAAGAATGCTTCTGAGGTGAATGGGGGCAGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTCCATTGGAAAAGATTCCCCATTTAATTAAGGAATCAAAAGGTCATTTAGTTGTTGCTGACGTTCATACAGTTGCAGAGGAGTCGAGCAATATCATTACAGATTCTGTTGCTGAATTTTCAACACATACAAAAAAGAAAAGTAACAAGAGTGGGAAGAACAGGCACAAAGTGGAAGAGGCCTTGATAACTGCATCTTCACCTCAGATTTCAAAAGAAACAGATCTTATAACGGAATCTGATAAACCAAAGGCTTCTCAATCTGTAATGGATCCACCTTCAGATCCACAACCGCCAATTAATAGAGATGAAAATCAGTTCAGAGAGCAGCAACCTCTGTTACCAGTTGTAGAGACCCTTGGCAAAGGTAACGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCAAGAAATGCTCAAAATAGACCAGGAGAAAAGATCCATGGCAATGATTCTGTTGTCTGGGCCCCTGTGAGATCTCTCAACAAATGTGAGGTTACCGATGAAACTGTTCAGAAGAGTGAAGCAGAGTCTGTTGCTTCATCTGTAAAGACTGACAATCAAGTGCAGAATATTCCAAAAAATAAACGAGCTGAAAGGGAGATATATGTACCGAAACCAGTAGCCAAAGAAATGGCGCAGCAAGGAACTATCAATCAAGATATTTCCCCTATGAACCAGGCACCTGATGATAATAAGGCAGATTCTAGTTCTCAAAGTTCTGATAATACTAGATCTGCCGGTGCTGTTTCTGTCAATGTGGGATTTTCCACAGATCACAGGAACGGGGATGGCAGGCACCATAAACAAAGCAAGGGACATTCATCGTGGCGACAACGGGGAGCAACAGAATATGGGCAAGGCTTACAAGATCAATCTTCTTATGTTTCAAATGCTGGTAGTTATGTTCAAAAGTCAATTGAATATCAATTACCTGAGAAGGCTACCGGAAGCTCTGCCAATGATTTCGCTGGTCTGGTTGATGAGTGGGATCCACCTGATGGATGGAATGATCCCAACTATTCAGCCTCTATCCAACCTGTCACTGCAGCTGTTGGGAGAGACCAGGGAGTGACAGGCAGGGGAAAACGATCCCAACCTAAGGGAAACAAGGCTATAGGGAACAATTGTGATTTAAATGAAAAGAAACTTAGAAGTGGAGACAACGAAAAAATTTCTTCTGGATCTGAAGTGCTCGAGGCAGATCAAAAAGATGTATCTGCTGCTGCTGCTAAAGAAATTCGGGGTGTTGGGGAACGTTCAACATCTCATTGGCAACCCAAATCGCGGATGGTCCAACCTCACAGTAATCAAAATGTTGATGCTGAAGCTGCACAGGCTAATAAAATGGGACCTAGACAATCCTCACATCGCACAAAAACAAGTGATGATGTGGCCCAAAACCAGTATGATACGTCCACTGGTGCAAGAACCATCACAGAAGAGGGATCAATTGTTGGTCATCATGGGGCCAGGGGAGAGAAGAAAATTTCTTCCCGCAAGGAGCGTCCTTACTCCCCAAACCAAGGGCCTACCCATACAGTGGAGGTTGCTCCTGCAAATACAGATGTCAGACGTGAGCAACAGTTGCCTACGTTTTACCATAAAGGTGGTGAGAATAATAACCGTTATGGAAGAGGGTCGGAATCTCGTCGGGAAAGGAATAACTCTCAACATCATAAGCAGCAGCATTATCCACCTGCTAATAGAGACAGGCAAAGACAAACTCTGCAGTACGAGTACCAACCAGTTGGGCCACACAATAGTAAACCGAACATGGACAGACCTAAGGATACGACTCAGCATTCAGGCTCAAGGTACGTGGAGAGGGGCCAAGCGCAGTCCAGAAGAGATGGTGGGAACTTTTACAAGCAACAAGGTGGACCAGTTTGA 4680 45.19 MTSSMLSGERRWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSASVSPNTDSASGSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLSHASLTSLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMPCKSDEFSLTSGDFPTLGSEKESVGKDAESQDNRSNGGATMKERTETSAIDDPKNVTTSVASANSWRSDNLPHNDDGSRPNVEKWLGHPQPYPGANIPPPHYDAWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPLDPFMYYPPQIPPGGLPNPQPPHGTGPRGHHPKTGDIYRPPMHDGFIHPPAMSIRPGFYPGPVTYDGYFRPPMGYCNSNDRDAPFMGLPAGPSGPSGPAGPAVYNRFLGQGQSASEPASSHGLSSGKGMVPEQAESGLPCDNQGQYKVLLKQQGNVNGKNEEKNMINSTTTNQLILEKAEQQRVSPWENDWEHKKEVDLRRRKLGVEPYSQASADQEAQSSESMKAKSHGNTRTGDGLLEKSDAASSGFSEVPKSLVTSAKDSSLIQKIEGLNAKARASDVRRDGAPICSRDEPDEFQSDDKHSDPFVAREVGVSAVFPENRDFKEVVDPASSELSLSTVDRNVKFHGGAPVHRRPNRGMQGRSDHHGRGKGNAQEVDGWHKRPLLDSPGMMATPNQESSVLDRDHNALGAINKAKPFSSDSLGDGPAPSIGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQRARALAKLEELNRRTVAGEGPNQWSNTNNDAIRNKIEEPRNPSNSRTLGTISGEHTTVSDLHVATNDSESTVGTDKNSPIVSGDTSSKKPSNGNKEQFVAHNELRSLEQEVSISDAAQNKNASEVNGGSASLKHKRTGNKQKPNIPLEKIPHLIKESKGHLVVADVHTVAEESSNIITDSVAEFSTHTKKKSNKSGKNRHKVEEALITASSPQISKETDLITESDKPKASQSVMDPPSDPQPPINRDENQFREQQPLLPVVETLGKGNGQWKSQHSRRMPRNAQNRPGEKIHGNDSVVWAPVRSLNKCEVTDETVQKSEAESVASSVKTDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTINQDISPMNQAPDDNKADSSSQSSDNTRSAGAVSVNVGFSTDHRNGDGRHHKQSKGHSSWRQRGATEYGQGLQDQSSYVSNAGSYVQKSIEYQLPEKATGSSANDFAGLVDEWDPPDGWNDPNYSASIQPVTAAVGRDQGVTGRGKRSQPKGNKAIGNNCDLNEKKLRSGDNEKISSGSEVLEADQKDVSAAAAKEIRGVGERSTSHWQPKSRMVQPHSNQNVDAEAAQANKMGPRQSSHRTKTSDDVAQNQYDTSTGARTITEEGSIVGHHGARGEKKISSRKERPYSPNQGPTHTVEVAPANTDVRREQQLPTFYHKGGENNNRYGRGSESRRERNNSQHHKQQHYPPANRDRQRQTLQYEYQPVGPHNSKPNMDRPKDTTQHSGSRYVERGQAQSRRDGGNFYKQQGGPV 1559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29400390 29408445 - CcPI632755_06g019160.1 Cco06g1916 182516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1916 1559 MobiDBLite consensus disorder prediction 757 799 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 56 90 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1052 1066 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 826 879 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1498 1514 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1101 1221 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1416 1431 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 231 251 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 119 163 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 531 549 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 665 879 - -
Cco06g1916 1559 Coils Coil 760 799 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1102 1121 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 991 1032 - -
Cco06g1916 1559 Pfam BAT2 N-terminus 13 135 IPR009738 -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1205 1221 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 54 163 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 594 625 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 183 280 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 677 702 - -
Cco06g1916 1559 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1553 IPR038808 GO:0040029(PANTHER)
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1474 1497 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 803 817 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1050 1080 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1351 1409 - -
Cco06g1916 1559 CDD UDM1_RNF168_RNF169-like 757 799 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 430 460 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1246 1559 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 567 585 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 901 929 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 526 625 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 331 345 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1142 1187 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 901 919 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 331 355 - -
Cco06g1916 1559 MobiDBLite consensus disorder prediction 1310 1327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1916 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39