Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1919 ATGCCGTTTGACAAATTGCGGTTTATAAACTGTTTGGATCCGCCATTGAATCTGGGCCCGGCCCAACTTAAACTAGCCCAATTTCATTGTCCGAGAGAGACAGAAAGCACGGCTGATACCGGCGGTGATCGAGCTTTGTTCTTCTTGCTTGCCCTTGCGGCCACGGCGGTTCTGAAAGACGAAAATCTCAGCAAAGTAAATGATGGGTATCGAAATTTGTGGAAGAATAGACAAAGTCTCATGGATGATTGGAAGGCTTGCAGCGATTGGGTCGACGAGAATGGGCAGCCAAATCTAGGGTTCTTTTCCACCCATTTCGGGAAATCCAGGGTACAGGTTGCAGATTGCAGTACTAGAGAATTTACAGATCAGAAGAGAATAGAAATGTCTGTTTCAGAGTTCATTGATCAATGGTGTAAGGAGCCTATACAGGAATGTGGCCTTACCTCAAACAACGGACTTACAGACAAGTCTGTACTATACTTGAAGGACTGGCATTTTGTGAAGGAATACCCAAATTATACAGCATACTCAACTCCACACTTTGTTTGTGATGACTGGCTTAACCTATACCTTGACAGTTACCGTATGCATAGGGATCCTGACTCTTACCAAGAGAAAGATGAAATTTGTTGCTCTGACTATCGTTTCGTTTACATGGGAGCAAAAGGTTCTTGGACTCCACTTCATGCTGACGTTTTCAGGTCATACAGCTGGTCAGCAAATGTTTGTGGAAAGAAACAGTGGTTTCTTTTGCCTCCTTCTCAGTCTCATCTTGTATTCGACAGGAATAAGAAGGCCTGTATATATAATATCTTTGATGATATACGTGAAAATTTGTTTCCTGGTTTTAAGAAGGCTACCTGGTTGGAGTGTACTCAAGAACAGAACGAAATTATATTTGTGCCAAGTGGCTGGTATCATCAAGTTCATAATCTGGATGACACCGTATCAATAAACCATAATTGGTTTAACTCCTACAACCTCTGTTGGGTGTTGGACTTGATGTTGCGGGACTACAACGAAGCTAAGGAGTACATAGAAGACATTAGAGATATATGTGATGATTTTGAAGGTCTCTGTCAGCGCAACCTCGCAGCTAACACAGGCATGAACTTCTATGATTTCTTCATCTTCTTAGCACGCTTTTCACTCGCCAATTTGGTGGTACTTGACACTCTAGCTAGAGACACCGAAAATATTGCTGGGAGCTTATCTCCAATGGTTCAACAGTTGGCTCAGAATCTTGCTTCAATACAGAAGATTGCCTTGAAAATGAAATTCCTGGAATGTTTTTCAGAAGACCAAGGATTCGTGTTGGATCTAGGAGAAACACACAAAGATCCCAAGTTTTCTGAGCTCTGTTATTCTTTAATTCAAACCTGTGGGTCCATACACAGACAACAGATTTTGAGCTTTTGTCCAAAGACGATCGCAACACATGAGTCTAGGACTTTAATTATCATTCAAAACTTTTGTGCTGGTGTTTCATCGCCCGAAGATCTTGTCAAATTTATCGACATGATTCTCTTTCTCTCTCATGATTGGATCGTTGCAGTGATTCAAATAAAAGGTGGAAAACAGAGGTTAGTAGTCTGTGTTCAGGCCAGCACACAAAAGATCTGGTTAAAGTTGGCGGCATCAAGCAGTGCCGTCCATTTCACTCTTCTCCTTACTCAGCTCAACCTTCCTGTTCTTCACTCCCTCTCATCTCTTGTTTTCTTTCCAAGAATCTGTTTTGAACAAATCTTTGTTGGAACTGTTTAA 1767 41.71 MPFDKLRFINCLDPPLNLGPAQLKLAQFHCPRETESTADTGGDRALFFLLALAATAVLKDENLSKVNDGYRNLWKNRQSLMDDWKACSDWVDENGQPNLGFFSTHFGKSRVQVADCSTREFTDQKRIEMSVSEFIDQWCKEPIQECGLTSNNGLTDKSVLYLKDWHFVKEYPNYTAYSTPHFVCDDWLNLYLDSYRMHRDPDSYQEKDEICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKQWFLLPPSQSHLVFDRNKKACIYNIFDDIRENLFPGFKKATWLECTQEQNEIIFVPSGWYHQVHNLDDTVSINHNWFNSYNLCWVLDLMLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFIFLARFSLANLVVLDTLARDTENIAGSLSPMVQQLAQNLASIQKIALKMKFLECFSEDQGFVLDLGETHKDPKFSELCYSLIQTCGSIHRQQILSFCPKTIATHESRTLIIIQNFCAGVSSPEDLVKFIDMILFLSHDWIVAVIQIKGGKQRLVVCVQASTQKIWLKLAASSSAVHFTLLLTQLNLPVLHSLSSLVFFPRICFEQIFVGTV 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29434722 29440011 - CcPI632755_06g019190.1 Cco06g1919 182519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1919 588 SMART cupin_9 186 338 IPR003347 -
Cco06g1919 588 Pfam JmjC domain, hydroxylase 218 323 IPR003347 -
Cco06g1919 588 SUPERFAMILY Clavaminate synthase-like 71 352 - -
Cco06g1919 588 Gene3D Cupin 76 325 - -
Cco06g1919 588 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 79 428 IPR050910 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016706(PANTHER)|GO:0018126(PANTHER)|GO:0043565(PANTHER)|GO:0045905(PANTHER)
Cco06g1919 588 ProSiteProfiles JmjC domain profile. 168 340 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1919 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1919 Cco-Chr6:29434722 Cco08g1274 Cco-Chr8:24530230 2.00E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g790 . . Bda06g00609 . . . . Bma12g01045 . . Cma10g00114 . Car10g00104 . Sed08g0098 . . Bhi02g00483 Tan09g2279 Cmetu02g0880 . Hepe09g0216 . . Cla06g01677 Cam06g1865 Cec06g1914 Cco06g1919 Clacu06g1820 Cmu06g1762 Cre06g2579 . . . Cone19ag0154 . . . . . Blo15g00261 . . Bpe07g00850 . . . . Cmo10g00119 . . . . . . Cpe18g00851 . . . . . . . . . . . . . . Lsi06g01566 Csa01g00132 Chy02g02595 Cme02g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009835 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59562 PF02373 JmjC 4.10E-18 CL0029 Cco TR