Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1921 ATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTCTGTTTTTCAGTCTTATATCCCTTCCTTTCTCTAAGAACTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCAATTGGAAGCTAAGTTTGAATGGATCAAACGAGGCTCTATATAATTGGAACCCCAAAAATGAAAATCCATGTGGGTGGTTTGGAATCACTTGCAACAGAAACAGAGAAGTAGTGGAAGTAGTACTGAGGTATGTGAACTTACCTGGAAAGCTTCCGTTGAATTTCTCTCCATTGTCATCCTTGAACAGGCTCGTCTTGTCTGGAGTGAACCTCACTGGTTCAATTCCTAAAGAGATCAGTGGTCTTACCCAGCTGCATACCTTGGAACTCAGTGACAATGGCCTAACTGGAGCAATCCCAAGTGAAATATGTGCTTTGGTAAATCTCGAACAGCTTTACCTGAATTCGAACCAACTCGAAGGGTCAATACCTGCAGGGATCGGGAGTCTTACAAACTTAAAGGAGCTCATTCTCTATGACAATCAGTTAAGTGGTGAAATTCCAATTAGTATAGGAAACTTGAAGCAGCTTGAAGTGATTAGAGCCGGAGGAAACAAGAACTTACTTGGTCCTGTGCCGGAAGAAATTGGTAATTGTAGCAGTTTGGTGATTCTTGGTTTGGCTGAAACAAGCATCTCCGGCTTTCTTCCAGCTAGTCTTGGCCGGCTCAAGAAACTTCAAACATTAGCAATCTATACTGCACTTCTCTCCGGCCAGATTCCTCGTGAACTTGGCGACTGCACTGAGCTTCAAAACATCTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCCAGCTCGTTAGGAAGGTTAAAAAATCTTCAGAGTGTGCTAATATGGCAGAACAATTTGGTCGGTGTTATACCCCCGGAGCTAGGTTGGTGTGACCAATTATTCGTCATCGACCTTTCAATTAATTCCCTAACGGGAAACATTCCTTCGACATTTGGGAACTTAACATTGCTCCAAGAATTGCAACTGAGTACTAATCAATTATCCGGTGAGATACCGAAGGAGATCGGAAACTGTCTGAGAATCACTCACATCGAGCTTGATAATAATCAGCTCACTGGTACGATTCCCTCTGAATTGGGAAATCTCACCAATCTTACATTGCTTTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCGCCCACCATTTCGAATTGTCGCAATCTCGAGGCGTTGGATTTATCACTGAATGCCTTGACAGGTTCAGTTCCGACGGGAATTTTCCAGTTGAAGAAACTCTCCAAGCTTCTGCTCCTTTCCAACAACCTCTCCGGTGTGATACCGCCGACAATAGGTAACTGTTCGTCTCTGTTTCGGTTTCGAGCTAATAACAACAAGCTCGCCGGAGAAATTCCGCCGGAGATTGGAAATTTGAAGAAGTTGGTTTTTCTAGACCTCGGAAACAATCACCTCACTGGAGCGTTGCCTCCGGAGATTTCCGGCTGTCGAAATTTGACGTTCCTCGATTTGCATTCCAACTCTCTAAAATTTCTTCCAGAAGAATTCAGCCAGCTTTCTTCCCTCCAGTACGTTGATCTCTCAAATAATTTAATCGAAGGGACGCCGAATCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCCGGGCCTATACCGACTGAAATCGGTTCTTGCTTGAAACTTCAGTTACTGGATTTGAGTTGCAATCAGCTTTCCGGAAACATTCCTTCAAGCTTAGGCAAGATTCCTTCATTAGAAATTGGTCTCAATCTGAGCTTAAACCAACTAACCGGCGAGATTCCGTCGGAGTTTGCAAATTTTAACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCTGGCGACCTCCACATTCTCACAGACCTGCAGAATCTCGTAGTCCTCAATGTATCCCACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTCTTCACGCAACTCCCTCTGAGCGTCCTCTCGGGTAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACAGAGACAACCACAGCAGCGGCGGTCGCCACACGCTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACTGCGTGCGCACTGCTATTAGCAGCAGTTTATATCATTCTCAAAGATAGACATTCATGTCGAAGATGCTTCAATGGGTCCCGCGATGAAGATCCAGACGCCGCCTTCGACAGCGACTTGGAGCTTGGCTCAGGTTGGGAAGTGACATTATACCAGAAGCTCGATCTCTCAATCTCTGACGTAATCAAGTGCTTAACGCCGGCCAATGTCATCGGCCGCGGCAAGACCGGCGTGGTGTACAGAGCCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCGGATAAATTCTCGGCAGCGGCGTTTTCATCCGAAATCGCAACATTGGCGAGGATCCGGCACCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGATTACTTGCCGAATGGGAATTTGGGCGCGTTATTACACGAAGGGAATGGGCGCGTGGGGCTGGACTGGGACAGTAGATTCAAGATAGCGCTGGGAGTGGCGGAGGGATTGGCTTATTTGCACCACGATTGCGTGCCGGCGATATTGCACCGGGACGTTAAGGCTCACAATATTCTGTTAGGGGATCGCTACGAGGCGTGTTTAGCGGACTTTGGGCTCGCCCGCTTGGTCGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCTGGCTCCTACGGCTATTTTGCACCTGAGTACGGATGTATGCTAAGGATCACCGAAAAGAGTGATGTGTATAGCTACGGCGTCGTTTTGCTAGAGATAATAACAGGCAAAAAGCCAGCGGATTCGTCATTTGCCGAGGGCCAGCACGTGATTCAATGGGTGAGAGACCATTTAAAGAAGAAGAAGGATCCGGTTTTGATATTGGATCCGAAACTTCAGGGTCAACCCGACCCGCAGATCCAGGAGATTCTACAAGCATTAGGAATCTCTTTACTCTGCACCAGCGACCGCTCCGAAGACCGGCCGACGATGAAAGACGTGGCGGCTCTTTTACGAGAGATCCAACAGGACCAGCCGGCAACAGCGGCGGAGGCCGCCGACAAGCCGCCACGAAAGAATAGCAACGCGACAAGCTTTGATACAACGACGTCGTTTTCGTCTTCGTCTTCTACGGCTCCTGCGAGTCATTTGCTTTTCACTTTGCCCCTTCAAGAATCGTCGCGTTGTTCTTATGCTTCGTTGTCATCGTCTGGCGCGTATATTCCACGCAAGCAATAA 3396 48.14 MPVNSWTLPSSILILCFSVLYPFLSLRTSAINEQGQALLNWKLSLNGSNEALYNWNPKNENPCGWFGITCNRNREVVEVVLRYVNLPGKLPLNFSPLSSLNRLVLSGVNLTGSIPKEISGLTQLHTLELSDNGLTGAIPSEICALVNLEQLYLNSNQLEGSIPAGIGSLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGPVPEEIGNCSSLVILGLAETSISGFLPASLGRLKKLQTLAIYTALLSGQIPRELGDCTELQNIYLYENSLSGSIPSSLGRLKNLQSVLIWQNNLVGVIPPELGWCDQLFVIDLSINSLTGNIPSTFGNLTLLQELQLSTNQLSGEIPKEIGNCLRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEALDLSLNALTGSVPTGIFQLKKLSKLLLLSNNLSGVIPPTIGNCSSLFRFRANNNKLAGEIPPEIGNLKKLVFLDLGNNHLTGALPPEISGCRNLTFLDLHSNSLKFLPEEFSQLSSLQYVDLSNNLIEGTPNPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPSSLGKIPSLEIGLNLSLNQLTGEIPSEFANFNKLGSLDLSYNQLSGDLHILTDLQNLVVLNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYRDNHSSGGRHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRRCFNGSRDEDPDAAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWDSRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLEIITGKKPADSSFAEGQHVIQWVRDHLKKKKDPVLILDPKLQGQPDPQIQEILQALGISLLCTSDRSEDRPTMKDVAALLREIQQDQPATAAEAADKPPRKNSNATSFDTTTSFSSSSSTAPASHLLFTLPLQESSRCSYASLSSSGAYIPRKQ 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29450132 29455608 - CcPI632755_06g019210.1 Cco06g1921 182521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1921 1131 Gene3D Ribonuclease Inhibitor 366 435 IPR032675 -
Cco06g1921 1131 ProSiteProfiles Protein kinase domain profile. 782 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1921 1131 MobiDBLite consensus disorder prediction 1077 1098 - -
Cco06g1921 1131 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 467 1058 IPR051716 -
Cco06g1921 1131 FunFam Predicted protein 187 283 - -
Cco06g1921 1131 Gene3D Ribonuclease Inhibitor 287 365 IPR032675 -
Cco06g1921 1131 Gene3D Ribonuclease Inhibitor 31 184 IPR032675 -
Cco06g1921 1131 MobiDBLite consensus disorder prediction 1064 1098 - -
Cco06g1921 1131 SMART serkin_6 782 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1921 1131 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cco06g1921 1131 Pfam Leucine Rich Repeat 484 506 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 651 669 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 579 600 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 341 362 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 269 290 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 317 338 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 608 626 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 365 386 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 388 410 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 FunFam Nuclear pore complex protein NUP107 31 186 - -
Cco06g1921 1131 SUPERFAMILY RNI-like 274 642 - -
Cco06g1921 1131 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 858 1074 - -
Cco06g1921 1131 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 284 377 - -
Cco06g1921 1131 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 Gene3D Ribonuclease Inhibitor 185 286 IPR032675 -
Cco06g1921 1131 Gene3D Transferase(Phosphotransferase) domain 1 858 1084 - -
Cco06g1921 1131 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524(InterPro)
Cco06g1921 1131 SMART LRR_typ_2 386 410 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 338 362 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 529 552 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 507 528 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 411 434 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 121 144 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 482 506 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 169 193 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 649 682 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 553 577 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 145 168 IPR003591 -
Cco06g1921 1131 SMART LRR_typ_2 290 314 IPR003591 -
Cco06g1921 1131 SUPERFAMILY Protein kinase-like (PK-like) 774 1057 IPR011009 -
Cco06g1921 1131 Gene3D Ribonuclease Inhibitor 436 695 IPR032675 -
Cco06g1921 1131 Pfam Protein kinase domain 786 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1921 1131 ProSiteProfiles Leucine-rich repeat profile. 508 529 IPR001611 GO:0005515(InterPro)
Cco06g1921 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1921 1131 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 412 697 - -
Cco06g1921 1131 Gene3D Phosphorylase Kinase; domain 1 766 857 - -
Cco06g1921 1131 SUPERFAMILY L domain-like 58 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0823 Cco-Chr6:9893654 Cco06g1921 Cco-Chr6:29450132 1.40E-99 dispersed
Cco06g1921 Cco-Chr6:29450132 Cco09g0985 Cco-Chr9:9315606 1.30E-100 dispersed
Cco09g2357 Cco-Chr9:37725253 Cco06g1921 Cco-Chr6:29450132 2.50E-16 transposed
Cco01g1479 Cco-Chr1:26563343 Cco06g1921 Cco-Chr6:29450132 1.90E-146 wgd
Cco06g1921 Cco-Chr6:29450132 Cco08g1955 Cco-Chr8:30375461 8.50E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86948 PF00069 Pkinase 4.60E-39 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1921 - - - 0.0