Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1928 ATGGTGGGTTCGGTAGGGTTGTGTCAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCCGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCTGATCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTACCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 45.09 MVGSVGLCQPSLVEMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29543816 29546827 - CcPI632755_06g019280.1 Cco06g1928 182528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1928 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Cco06g1928 240 Coils Coil 145 172 - -
Cco06g1928 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Cco06g1928 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1928 Cco-Chr6:29543816 Cco11g1139 Cco-Chr11:22185943 8.70E-47 dispersed
Cco09g0063 Cco-Chr9:551810 Cco06g1928 Cco-Chr6:29543816 1.00E-22 transposed
Cco09g2049 Cco-Chr9:34893718 Cco06g1928 Cco-Chr6:29543816 1.50E-24 transposed
Cco01g1487 Cco-Chr1:26631782 Cco06g1928 Cco-Chr6:29543816 7.00E-52 wgd
Cco10g1378 Cco-Chr10:26834204 Cco06g1928 Cco-Chr6:29543816 2.90E-56 wgd
Cco06g1928 Cco-Chr6:29543816 Cco09g2134 Cco-Chr9:35716222 1.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59563 PF03195 LOB 5.30E-42 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1928 - - - 0.0