Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1935 ATGCCGGCGACGGTTGCAGAGATGGAACCACGATGGCGGCGGCGACCTCTGTTCCTTCTACTTCAGCTCTTTATCTTCTACCTCTTCTTCTTTCCCTCTTATTCAGTTGATTTTCTCCTCAATTCATTCTCAAACCAATCGAATGGCACTGACATCATTCTCATTAGCGACGCGAGATTCGATTCCCCTGTAATTCGCCTCAACAACGACTCAAACCCAAATTCAATCGGGCGAGCTTTCTATCACACGAAGCTGATTATGAAACCCATTTCGAATTCCACTACGATTTCTTCTTTTTCAACTTCTTTTGTGTTCTCAATCTTGTTGGAAGTCGCTACAAGTCCAGGCTTCGGTATGGCCTTCGTTCTTTCCAATTCCACTTCCCTTCCCGGCGTTATAGCCGGCCAATACTTCGGTCTCTTCACAAATTCCACAACCCATGTCGTTGCTCCACTTCTCGCCGTCGAATTCGACACCGGCCGAAACACAGAGTTCAACGACCCAGATGATAGCCACATCGGAATCGATTTGAACAGTATGCTGTCGAGTAAAACACACGGCGCTGGGTATTTTGACTCTAATGGGCAATTTATTCCAATTCAGATGAGAAATGGGCAAAACCTTCGCGCTTGGATCGAATTCGATGGGTCAAATTTCGAAATCAATGTCACAATCGCCCCAATTGGAATTCCTCGTCCTTCAATACCCACTTTGAGTTTTAGGGATCCTGTGATTGCGAATTATGTATCGACTGAAATGTTTGTGGGATTTTCAGCATCAAAGACAAAATGGGTTGAGGCGCAGAGGATTTTGGCGTGGAGTTTTAGTGACACTGGGGTTGCTAGAGAGATTAACACCACAAATTTCCCTGTGTTTATGAGAGCATCGTCGTCGTCTTCCTTGTCGCCGGGATCTGTTGCCGGAATTGTAATTGGCTGTGTTGTGTTTGTGATCATAATTTCTGGATTTGGGGTTTTTTGGTATTGGCGAAAGAACAGAGCAAAAGACGAAGATGATGAAATTGAGGATTGGGAGCTCGAATACTGGCCTCACAGATTCTCCAACGAGGAGCTTTCAAAGGCTACTGATGGATTTTCCGATGAAAATCTGTTGGGTTCCGGCGGATTTGGAAAGCTTGGTTTAGCTTGTTGTCATCCGGACCCGGAACGCCGGCCGACAATGAGAGAGGTTGTGGCAGTTTTGATAGGAGAACAACCGGCAGCCGAGTCGGTAGAGCTTTTATCGGGATTGGCGAGTGGCATGGTTGATGGCATCTCAGACGTTGATGTGTGA 1293 46.33 MPATVAEMEPRWRRRPLFLLLQLFIFYLFFFPSYSVDFLLNSFSNQSNGTDIILISDARFDSPVIRLNNDSNPNSIGRAFYHTKLIMKPISNSTTISSFSTSFVFSILLEVATSPGFGMAFVLSNSTSLPGVIAGQYFGLFTNSTTHVVAPLLAVEFDTGRNTEFNDPDDSHIGIDLNSMLSSKTHGAGYFDSNGQFIPIQMRNGQNLRAWIEFDGSNFEINVTIAPIGIPRPSIPTLSFRDPVIANYVSTEMFVGFSASKTKWVEAQRILAWSFSDTGVAREINTTNFPVFMRASSSSSLSPGSVAGIVIGCVVFVIIISGFGVFWYWRKNRAKDEDDEIEDWELEYWPHRFSNEELSKATDGFSDENLLGSGGFGKLGLACCHPDPERRPTMREVVAVLIGEQPAAESVELLSGLASGMVDGISDVDV 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29611262 29613253 - CcPI632755_06g019350.1 Cco06g1935 182535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1935 430 CDD lectin_legume_LecRK_Arcelin_ConA 36 279 IPR001220 GO:0030246(InterPro)
Cco06g1935 430 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Cco06g1935 430 Gene3D Phosphorylase Kinase; domain 1 334 399 - -
Cco06g1935 430 Pfam Legume lectin domain 36 288 IPR001220 GO:0030246(InterPro)
Cco06g1935 430 Gene3D - 34 296 - -
Cco06g1935 430 PANTHER - 378 405 IPR050528 GO:0005886(PANTHER)
Cco06g1935 430 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 293 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1935 Cco-Chr6:29611262 Cco04g0992 Cco-Chr4:25519287 1.30E-48 dispersed
Cco06g1935 Cco-Chr6:29611262 Cco07g0279 Cco-Chr7:2871059 4.40E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1935 - - - 0.0