Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1942 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGGTCAGATTGGAAGGCAAATGGTTGGTTGACCCCAGGCATCTTTTCGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGCTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGAGAAGTTGCAATGCTGTCTAAAGTACAACATAAGAATCTTGTCAAGTTTGTTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGTGTAGCAGTTGGTTTTGCTCTTGATATTGCTCGTGCTATGGAATGTCTTCACTCACATGGGATCATACACCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAAACAGTTAAATTAGCAGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTTAGGCCTAGCGCAGAGAATATTCCAGAGGAACTGGCTATCATTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATAATCCAAATGTTACTTAATTACCTTTATACCATTTCACCCCCCGAGCCGATGATACCTTCCCGAATTTTCTCTTCTGAGAACACTGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAATCCCAGAGGTGGTTTTAGTTATGTAGTATCACAGCCTAAGCCTTACATCATCATGGTAGAATGGAAGATCATCCTGATGCTTGGTTTATCTACTTATATTTATCTGTGCATTTCACTTTCTTCTTCAACTTGGTGCTTTATGCCTTCAATCTACAAGATTATGTACAGAGCTGTAACTGAATTAGCTGCCTTTATTTAA 1221 43.33 MEAGSRFYSATDEVRLEGKWLVDPRHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFVGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENIPEELAIILTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRIFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGGFSYVVSQPKPYIIMVEWKIILMLGLSTYIYLCISLSSSTWCFMPSIYKIMYRAVTELAAFI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29656891 29659728 + CcPI632755_06g019420.1 Cco06g1942 182542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1942 406 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Cco06g1942 406 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 FunFam serine/threonine-protein kinase HT1 108 307 - -
Cco06g1942 406 FunFam Kinase suppressor of Ras 1 16 106 - -
Cco06g1942 406 CDD STKc_MAP3K-like 33 287 - -
Cco06g1942 406 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Cco06g1942 406 PANTHER SERINE-THREONINE PROTEIN KINASE 25 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco06g1942 406 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Cco06g1942 406 MobiDBLite consensus disorder prediction 316 338 - -
Cco06g1942 406 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Cco06g1942 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1942 406 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1942 Cco-Chr6:29656891 Cco11g1147 Cco-Chr11:22402226 2.80E-61 dispersed
Cco04g1695 Cco-Chr4:32125895 Cco06g1942 Cco-Chr6:29656891 1.10E-83 transposed
Cco10g2256 Cco-Chr10:35461495 Cco06g1942 Cco-Chr6:29656891 5.50E-116 transposed
Cco10g1367 Cco-Chr10:26684207 Cco06g1942 Cco-Chr6:29656891 6.80E-157 wgd
Cco06g1942 Cco-Chr6:29656891 Cco09g2141 Cco-Chr9:35784739 5.20E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86949 PF07714 PK_Tyr_Ser-Thr 5.60E-58 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1942 - - - 0.0