Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1946 ATGGAGACTCTTCTTCATCATCTTCTTCCTCTTCAACTGTCACTTCATTCAATTTCCTTCACTATTTTCATCCTCATCCCCATCTTCCTTCTCCAAAAATGGCTTCTCTCCCCTTCACAAACCTCCCCTCCATCACCCCCAAAGCTTCCAATCTTCGGCCATCTTCTCAACCTCGGCTCCCATCCTCATCTCACTCTCCTAAACTACGCCCGCCACCATGGTCCTCTGTTTCTCCTCCGCCTCGGCTCTGTTCCCACCATCGTTGTTTCTTCCTCTGATCTCGCTCGTGATATCATGAAAACCCACGATCTCGTCTTCGCCAACCGACCCAAATCAACCATTGGCCACAAGCTTCTTTACAGCTCCAGAGACATAGCCGCTTCTCCCTACGGCGAGTACTGGCGGCAGATGAAAAGCGTTTGCGTTCTTCATCTCTTGAGCAGCAAAAGAGTTCAATCCTTCCGTTCTATAAGGGAAGAAGAAGTCAAATGCATGATCGAGAAGATCCAACACAACCCTGTTTCGGTGAATTTGACTGAAATCTTCTGTGGATTGACTAACAATGTGATTTGCAGAGTGGGTTTAGGGAGAAAATATGGAGCGGGAGAAGATGGGAAGAAGTTCATGGATCTTTTATTGGAATTTGGGCAATTATTGGGGAGTTTTAGCATTAGAGATTTCATTCCTTGGTTGGGTTGGATTGATGGGATTAGTGGGCTGGATTCTAAAGCAAACAGAGTAGCTAAAGAGCTGGATGATTTCTTTAACAGAGTGATTGAAGATCATATCAATCTAGAAAACAGAGACCAGCATTTTGATGAGCATAAGGATTTGGTAGATGTTTTGCTTTGGATACAGAGAGAAAACTCCATTGGTTTTCCCCTTCATATGGATAGCATCAAAGCTTTAATCTTGGACATGTTTGCAGCAGGCACAGACACAACTTACACAGTATTAGAATGGGCAATGTCAGAATTGTTGAAACACCCAGAAGCCATGGAGAAACTGAAGAATGAAATTAAAGAAATAAAAAGTGATCACAAAGGGTGCTATGTAAACCAGGATGATTTAGACAAAATGGTATATTTAAGGGCAATAATCAAAGAGACATTGCAACTACACCCACCCATTCCACTTCTCGTCCCGAGAGAATCAACCCAACACATAAAGTTAAGAGGGTATGATATTAAACGTGGGACTCGAGTTATGATTAATGCATGGGCAATCGGGAGAGACCCAAAATTATGGGAAGAAGCAGAGGAGTTTCGACCAGAAAGATTTATGAACAATTCAATAGATTTCAAGGGTCAGGATTTTGAGTTGATCCCATTTGGTGCAGGGAGAAGAGGATGTCCTGGAATTGTATTTGCAACTATGATTAATGAGATAGCTTTAGCAAATTTGGTGCACATGTTTGAGTGGATATTGCCAAATGGTGAGGATTTGGACATGACAGGAACCTTTGGTTTAACCATTCATAGAAAGTTTCCACTTGTGGCTACCGCAATTCCTAACAAGGAGTGA 1524 42.52 METLLHHLLPLQLSLHSISFTIFILIPIFLLQKWLLSPSQTSPPSPPKLPIFGHLLNLGSHPHLTLLNYARHHGPLFLLRLGSVPTIVVSSSDLARDIMKTHDLVFANRPKSTIGHKLLYSSRDIAASPYGEYWRQMKSVCVLHLLSSKRVQSFRSIREEEVKCMIEKIQHNPVSVNLTEIFCGLTNNVICRVGLGRKYGAGEDGKKFMDLLLEFGQLLGSFSIRDFIPWLGWIDGISGLDSKANRVAKELDDFFNRVIEDHINLENRDQHFDEHKDLVDVLLWIQRENSIGFPLHMDSIKALILDMFAAGTDTTYTVLEWAMSELLKHPEAMEKLKNEIKEIKSDHKGCYVNQDDLDKMVYLRAIIKETLQLHPPIPLLVPRESTQHIKLRGYDIKRGTRVMINAWAIGRDPKLWEEAEEFRPERFMNNSIDFKGQDFELIPFGAGRRGCPGIVFATMINEIALANLVHMFEWILPNGEDLDMTGTFGLTIHRKFPLVATAIPNKE 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29687952 29690045 + CcPI632755_06g019460.1 Cco06g1946 182546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1946 507 Gene3D Cytochrome P450 37 502 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PANTHER CYTOCHROME P450 71B11-RELATED 21 501 IPR050193 -
Cco06g1946 507 SUPERFAMILY Cytochrome P450 43 504 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 Pfam Cytochrome P450 43 491 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 FunFam Cytochrome P450 83B1 30 501 - -
Cco06g1946 507 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco06g1946 507 CDD CYP71-like 73 498 - -
Cco06g1946 507 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco06g1946 507 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0325 Cco-Chr3:3607856 Cco06g1946 Cco-Chr6:29687952 1.60E-122 dispersed
Cco05g2866 Cco-Chr5:36285927 Cco06g1946 Cco-Chr6:29687952 4.30E-87 dispersed
Cco05g2867 Cco-Chr5:36293239 Cco06g1946 Cco-Chr6:29687952 4.70E-83 dispersed
Cco06g1946 Cco-Chr6:29687952 Cco11g0030 Cco-Chr11:380718 4.20E-99 dispersed
Cco04g1773 Cco-Chr4:32677857 Cco06g1946 Cco-Chr6:29687952 7.50E-96 transposed
Cco05g0098 Cco-Chr5:839160 Cco06g1946 Cco-Chr6:29687952 1.80E-89 transposed
Cco07g0958 Cco-Chr7:22075655 Cco06g1946 Cco-Chr6:29687952 3.20E-70 transposed
Cco11g0041 Cco-Chr11:496808 Cco06g1946 Cco-Chr6:29687952 2.40E-67 transposed
Cco03g0320 Cco-Chr3:3564714 Cco06g1946 Cco-Chr6:29687952 1.70E-117 wgd
Cco05g2861 Cco-Chr5:36227444 Cco06g1946 Cco-Chr6:29687952 1.40E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1946 - - - 0.0