Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1947 ATGGAAGCTCTGGCGCTTCCTTCCCTGAATTCACTCCCCGTTTCTTGTTCTAATTTGAAGAAACGAGGTTTTGCCAACTACCCCAGAAGATTGCATCACTGTAAATTTTACCAACAATCCACCTTCAAGTTCAATGGTACCCACCGCTCTCATTTCAATGTTATCAAAATGCAAAGTGATAGTGATGACTACGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATCCGAGAAGGCAAAGTGAAAGTTCTGGTGCCAAGGGAAGCTGGTTATGCCATTCAGCTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACAAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGATTTTGATGACAAACTTGATCCTGGAACTCTTTCTCGAAAAGTCGCAAGCTTCATGATGGGGGGTTGGTGGAGTGGTGTGCCTACAGTATCCTACAACAGCCGATTCTTGACAGAAGTTCAAGAGAAGTTTCCAAAAGATGCTGACCTTATTCTTGCATGCCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAACTCCTCTACAATGCTGGTTATAGAAACCTTTTCTGGGTTCAAGGCGGTCTAGATGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGTCCTCAGCCCTTAAAATTCGCTGGGATTGGTGGGCTTTCAGAATTCCTTGGTTGGACAGATCAACAAAGGGTGGCTGGTGCAAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGGTTGCAGTCTTTCTTGCTGCTGATGTCCTGTTTATCGGCGCTCAGCAATTGGGTCATTATATTCAGGAATTACGACCCCGGCTGCCTACTCTGCATAAGAGGACACAAGAACATTTTGCACAACAATACAACCCACCATTTTCCCTTAATTGGCCAACAACTACAACACAAATAAAAGCATATGATGATTTGAATCCAAAACACAGAAAATTGGAAGAACAAGAATTGGTTGATTTTGAAAATGAACTTTGTATCAATGGGACAGTTTACTTAAGAGAGCTCCAACAACTTCTACATGGAGACGATTTGAAACCATCTCAGCTTCAGGAGGCTATCCCAACATTCTAA 1143 43.74 MEALALPSLNSLPVSCSNLKKRGFANYPRRLHHCKFYQQSTFKFNGTHRSHFNVIKMQSDSDDYELKQMRDMAAAKKRWDSLIREGKVKVLVPREAGYAIQLSDKTLLDVRPSTEHKKAWVKGSTWIPIFDFDDKLDPGTLSRKVASFMMGGWWSGVPTVSYNSRFLTEVQEKFPKDADLILACQKGLRSLAACELLYNAGYRNLFWVQGGLDAAEEEDLVREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLVAVFLAADVLFIGAQQLGHYIQELRPRLPTLHKRTQEHFAQQYNPPFSLNWPTTTTQIKAYDDLNPKHRKLEEQELVDFENELCINGTVYLRELQQLLHGDDLKPSQLQEAIPTF 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29691193 29696174 - CcPI632755_06g019470.1 Cco06g1947 182547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1947 380 Gene3D - 89 256 IPR036873 -
Cco06g1947 380 ProSiteProfiles Rhodanese domain profile. 101 224 IPR001763 -
Cco06g1947 380 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 291 IPR044664 -
Cco06g1947 380 Pfam Rhodanese-like domain 104 214 IPR001763 -
Cco06g1947 380 CDD RHOD 106 214 - -
Cco06g1947 380 SMART rhod_4 91 221 IPR001763 -
Cco06g1947 380 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 96 215 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1947 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g1149 . 1270 1585 Sulfurtransferasese/Rhodanese AT1G79230 75.6 1.4e-145 512.7
Cco05g1149 . 1270 1534 Sulfurtransferasese/Rhodanese AT1G16460 73.2 7.7e-113 403.7
Cco01g1735 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 63.0 7.0e-81 297.7
Cco05g0118 . 461 921 Sulfurtransferasese/Rhodanese AT4G01050 52.3 4.3e-120 428.7
Cco01g1204 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.5 2.1e-224 775.4
Cco07g0556 . 83 435 Sulfurtransferasese/Rhodanese AT2G40760 75.6 4.5e-156 548.1
Cco10g1519 . 529 857 Sulfurtransferasese/Rhodanese AT1G17850 68.5 4.0e-138 488.4
Cco04g0171 . 30 228 Sulfurtransferasese/Rhodanese AT2G42220 74.9 1.6e-85 312.8
Cco10g2195 . 384 564 Sulfurtransferasese/Rhodanese AT3G08920 62.4 9.1e-64 240.4
Cco06g1947 . 1 290 Sulfurtransferasese/Rhodanese AT4G24750 66.9 3.9e-110 394.8
Cco02g2436 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 66.1 2.6e-85 312.4
Cco10g0483 . 113 454 Sulfurtransferasese/Rhodanese AT5G55130 73.4 3.2e-146 515.0
Cco05g1080 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.0 3.1e-78 288.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31