Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1948 ATGACCTTCATGTTGCAGAGTTCTTGTGAAGTGATGGGTGGGAAAAGTTCTAAGCATGGAAGTTCAAGGCGGACTTCGTCTAGTCGGTCGAACTTGCAGCAGCGGAGTCATTACGGTTATCCACAGTCACCATATGCTCAATCAAGAAGCACGCCGCAGTATCGGTATGCACCTTCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTAGAGCAGGTTACTGAGGCATTGGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTCGGTATAGATTTCACGAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGACAAACATTATCTTCCTTCGATGAGGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCGACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGACGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATATAGGGAACTGGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCCCCGATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGCGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTCGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGAATACCCCTTGTCGATTATACTAGTCGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAACATCCCAGCTCGAGCATTTGATAACTTCCAATTTGTAAATTTCACAAATATAATGTTGAAGAATATGGATCGATCCAGAAAGGAAACGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCAACACTGGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAGAAAACCTCAAACTCAAGCAGTTCTCGCCCAATGGCGCCCTCATTTGGTGGAGCTGCTCCTGCCCGAACTGCACCTCCTCTTAGTTCGGTTTCTGATGCTCATGCTTGTCCAATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGCGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGCAGTGCCCCATATGCCGCAGCTTTATTGACACTAGGATAAAGCTTTATTAG 1332 45.2 MTFMLQSSCEVMGGKSSKHGSSRRTSSSRSNLQQRSHYGYPQSPYAQSRSTPQYRYAPSTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRSRKETEFALAALMEIPSQYKATLELDILGASRGKAIDRIPLPPPRYGPSTQKTSNSSSSRPMAPSFGGAAPARTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQQCPICRSFIDTRIKLY 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29701420 29704258 + CcPI632755_06g019480.1 Cco06g1948 182548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1948 443 Pfam Copine 128 341 IPR010734 -
Cco06g1948 443 SUPERFAMILY RING/U-box 397 438 - -
Cco06g1948 443 Coils Coil 72 92 - -
Cco06g1948 443 PANTHER COPINE FAMILY PROTEIN 1 5 443 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cco06g1948 443 SMART VWA_4 103 306 IPR002035 -
Cco06g1948 443 MobiDBLite consensus disorder prediction 361 376 - -
Cco06g1948 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 443 IPR013083 -
Cco06g1948 443 ProSiteProfiles Zinc finger RING-type profile. 400 433 IPR001841 -
Cco06g1948 443 SUPERFAMILY vWA-like 105 287 IPR036465 -
Cco06g1948 443 MobiDBLite consensus disorder prediction 349 387 - -
Cco06g1948 443 MobiDBLite consensus disorder prediction 1 67 - -
Cco06g1948 443 Pfam Zinc finger, C3HC4 type (RING finger) 398 438 - -
Cco06g1948 443 MobiDBLite consensus disorder prediction 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1948 K16280 - - csv:101221610 787.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1273 Cco-Chr4:28074155 Cco06g1948 Cco-Chr6:29701420 6.20E-121 dispersed
Cco06g1948 Cco-Chr6:29701420 Cco11g1151 Cco-Chr11:22471130 2.80E-19 dispersed
Cco04g1893 Cco-Chr4:33486942 Cco06g1948 Cco-Chr6:29701420 6.10E-120 transposed
Cco10g1358 Cco-Chr10:26626636 Cco06g1948 Cco-Chr6:29701420 5.10E-157 wgd
Cco05g2869 Cco-Chr5:36304338 Cco06g1948 Cco-Chr6:29701420 1.50E-161 wgd
Cco06g1948 Cco-Chr6:29701420 Cco09g2148 Cco-Chr9:35862665 2.40E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136