Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1954 ATGGCTTCACCTTCCTCTAAACTCCTTCCACTCTTGGCTTTTCTGTCCGTTCTTCTCCGCGTCCATGCCCGATTGAACCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAATTACTTGGGCATTGACGGTCAACTCTCCCCCTCCCCATGCCACAACGCCGGTGTGTTCTGCGAGCGGCGGCTCTCCGACAACGGCACCTATGTTTTGAGGATCACCAGGCTCATTTTCAACTCCAAAGGTCTCACTGGTTCTCTTTCTCCGGCTATCGGGCGGCTCACGGAGTTGAAAGAGCTTACGGTTTCTAACAATCACCTCGTTGACCAAGTACCTCCCCAAATCGTTGACTGCCGAAAACTGGAAATTCTCGATCTCCAAAACAACCAATTTTCTGGAAAAATTCCGTCTGGATTTTCCTCACTGATTCGCCTTCGAGTCATCGATCTTTCGTCCAATAAATTCTCGGGGAGTTTGGATTTCTTGAAGCATTTCCCCAACTTGGAAAGTCTCTCCATAGCCAACAATTACTTCACAGGGAAGATCCCAGCTTCAATTCGTTCATTTCGCAATCTTCGAGTCTTCAACTTCTCCGGAAATCGCCTTCTCGAAAGTTCAGCCCCTATCGTGAAGGGTGTTGAGTTCTATTCGGCTACAGAAGTTCCCAAGCGTTATAAGTTAGCTGAGAATTCCAGTACGAAAGGCACGCACAGGGCCGCCGCTACAGCGCCAACTTCGACTGCTCAAGCTCCATCTCCCGTGCCACCCCCTACTCATAAGCATCGGAAAAATGAAGCAAAGAAGGTAATTTCTTGGATACTTGGGTTCCTCGCTGGAGCAATTGCTGGGAGTTTGTCAGGGTTTATCTTTTCTCTACTGTTTAAACTCGTCATAGCAGCTATAAAAGGTGGAAGCAAGAATTCAGGTCCCTCAATCTTTGCTCCTAAGTTGATAAAACGAGATGATTTGGCTTTTCTAGAGAAAGACGATGCGCTTGCATCGCTGGAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCTGAATTACCAGAAAAAAGTGGGAAAATGTTTGCAATAAAGAAGATAAGTCAACCCCCAAAGGATGCGGCCGAGTTAGCTGACGAGGATAGCAAGCTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAAAACTGTGGGCGAAATCCGGCATCGGAATCTTCTTCCTCTTGTGGCCCATGTCCCTCGTCCTGATTGCCACTACCTTGTGTATGAATTGATGAAGAATGGCAGCTTGCAAGATATGTTGAATCAGGTTTCAGCAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAAAATTGCTCTTGGAGTTGCATCTGGGCTTGAGTATCTTCACATGAATCATACCCCACGTATCATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTCGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATAACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACAATGAAGTTCACTGATAAATGTGATATATACGGCTTTGGGGTTCTGCTAGGTGTCTTGGTGATCGGGAAACTCCCATCTGATCAGTTTTTCCAAAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCGGATAATCCTAGGGGAGCCATCGATCCAAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTTTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAATAGCAAGGATGTCAGATGCATGCTGTCCCAAATCAAGCACGATGCAAAACTTCACTGTCGTGTTGGAAATGAAATAACAAGATTGCGACTAAGAAATTTGTCCATCTCATGGAAGAACACAAAACAGACAGACTCTGCTCATTCAAGTTCTTTTATTAGCTGCTTGACTTACTCATTAATGACTGATACAGGCGAAATAATCACTTCTATAAATCAAGAACTTAACCTTCAAGAGCAGGACATTGAAATGTGA 2094 45.08 MASPSSKLLPLLAFLSVLLRVHARLNLDPSDLRAFSIIKNYLGIDGQLSPSPCHNAGVFCERRLSDNGTYVLRITRLIFNSKGLTGSLSPAIGRLTELKELTVSNNHLVDQVPPQIVDCRKLEILDLQNNQFSGKIPSGFSSLIRLRVIDLSSNKFSGSLDFLKHFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSAPIVKGVEFYSATEVPKRYKLAENSSTKGTHRAAATAPTSTAQAPSPVPPPTHKHRKNEAKKVISWILGFLAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKISQPPKDAAELADEDSKLMSKKMRQIKSEIKTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHKIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHITASNVAGTVGYIAPEYHQTMKFTDKCDIYGFGVLLGVLVIGKLPSDQFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDAKLHCRVGNEITRLRLRNLSISWKNTKQTDSAHSSSFISCLTYSLMTDTGEIITSINQELNLQEQDIEM 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29734261 29737268 + CcPI632755_06g019540.1 Cco06g1954 182554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1954 697 SMART serkin_6 333 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1954 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1954 697 Gene3D Ribonuclease Inhibitor 159 215 IPR032675 -
Cco06g1954 697 SUPERFAMILY Protein kinase-like (PK-like) 333 624 IPR011009 -
Cco06g1954 697 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Cco06g1954 697 Gene3D Transferase(Phosphotransferase) domain 1 425 642 - -
Cco06g1954 697 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
Cco06g1954 697 Gene3D Ribonuclease Inhibitor 18 158 IPR032675 -
Cco06g1954 697 MobiDBLite consensus disorder prediction 233 249 - -
Cco06g1954 697 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1954 697 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 262 627 IPR051564 GO:0016020(PANTHER)
Cco06g1954 697 SUPERFAMILY L domain-like 47 206 - -
Cco06g1954 697 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515(InterPro)
Cco06g1954 697 FunFam Leucine-rich repeat receptor protein kinase EMS1 69 163 - -
Cco06g1954 697 FunFam Leucine-rich repeat receptor-like protein kinase 425 632 - -
Cco06g1954 697 MobiDBLite consensus disorder prediction 229 264 - -
Cco06g1954 697 Pfam Protein kinase domain 336 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1954 Cco-Chr6:29734261 Cco07g0137 Cco-Chr7:1429822 8.60E-55 dispersed
Cco06g1954 Cco-Chr6:29734261 Cco08g1352 Cco-Chr8:25436011 9.90E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86950 PF00069 Pkinase 1.50E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1954 - - - 0.0