Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1956 ATGGCAATGGCACACGAAACGACGCCGCTCAGGGTAGCCACTCTCACAACCTCGAACACCACTTGCCTGGCCGCCCATAACGGCCTCCTCTACTCCGGCTCCGCCAACCAAATCGCCGTCTTCGATTTAAACAACGACTTCACGCATATCGACACTCTTCGCATAAACGACGCCGCTTCGGGGTCCGTTAAGTCCATCGCTTTTGGGCCTTGGAAAATCTTCACGGCCCATCAGGATTGCAAGATCCGCGTATGGAAAATCACGCGCTCGGAACCGCCACGTCATCGTCTTCTGGCAACTCTCCCCACCGTTAAAGACCGGCTTTACCGGTTTATTTCGCCGGGGAATTACGTACGTGTACGGCGCCACCACAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTGAATGGAGGGTTTGTGTACTCTGTTTCATGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCGGATCATAAGTGTTTGTTGTCCGTCAAAGCTCACGACGATGCGGTCAACGCGGTTGCTGTAGGTCAGAACGGCGTCGTTTATACCGGCTCTGCGGATGGGGTTATTGGAGTTTGGGAGATTAGGGAGGGGAAGAAGAAGAAGTATACGTTGGTTGGGACTTTGGACAACCACAAATCCACGGTAAACGCGATCGCGTTGAACGAGAGAGGTTGGGCAATGTTTTCGGGGAGTAGTGACCGTTCAATAATGGTGTGGAAGAAAGAAGAGGCCGGAAAACAAATTGCGTTTGTTGAGGCTTTATCGGGTCATCAAGGGGCTGTATTGTCCTTGTATACTCTTCGAGATTTCTTAGTCAGTGGCTCTGAAGATCGGACGCTCAGGATTTGGAGAGGCGACGTCACTAACGGCTACCATTGTACGGCTGTGATGGATGGACACAAGTCGCCAGTGAAGTCTTTGGTTGCCGTCAGAGCCGGTGAACGAAGTTTGATGATCTGTAGTGCCAGTTTGGATGGAGAAATACAAGTTTGGAGTTTCATGTTTTGA 1026 51.46 MAMAHETTPLRVATLTTSNTTCLAAHNGLLYSGSANQIAVFDLNNDFTHIDTLRINDAASGSVKSIAFGPWKIFTAHQDCKIRVWKITRSEPPRHRLLATLPTVKDRLYRFISPGNYVRVRRHHKRLWIEHWDAVSGVVVNGGFVYSVSWDRSFKVWSASDHKCLLSVKAHDDAVNAVAVGQNGVVYTGSADGVIGVWEIREGKKKKYTLVGTLDNHKSTVNAIALNERGWAMFSGSSDRSIMVWKKEEAGKQIAFVEALSGHQGAVLSLYTLRDFLVSGSEDRTLRIWRGDVTNGYHCTAVMDGHKSPVKSLVAVRAGERSLMICSASLDGEIQVWSFMF 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29739814 29741742 - CcPI632755_06g019560.1 Cco06g1956 182556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1956 341 Gene3D - 118 208 IPR015943 GO:0005515(InterPro)
Cco06g1956 341 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Cco06g1956 341 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Cco06g1956 341 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 246 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 FunFam BnaA09g28200D protein 118 203 - -
Cco06g1956 341 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 289 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 341 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 289 - -
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 204 - -
Cco06g1956 341 Gene3D - 4 112 IPR015943 GO:0005515(InterPro)
Cco06g1956 341 SUPERFAMILY WD40 repeat-like 16 339 IPR036322 GO:0005515(InterPro)
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 341 - -
Cco06g1956 341 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 338 IPR045182 -
Cco06g1956 341 SMART WD40_4 253 290 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 SMART WD40_4 207 246 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 SMART WD40_4 8 42 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 SMART WD40_4 46 86 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 SMART WD40_4 161 199 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 SMART WD40_4 296 338 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 SMART WD40_4 114 158 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 Gene3D - 209 340 IPR015943 GO:0005515(InterPro)
Cco06g1956 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 208 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 Pfam WD domain, G-beta repeat 258 289 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515(InterPro)
Cco06g1956 341 Pfam WD domain, G-beta repeat 299 338 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1956 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1433 Cco-Chr1:26095238 Cco06g1956 Cco-Chr6:29739814 1.30E-47 dispersed
Cco06g1956 Cco-Chr6:29739814 Cco07g1395 Cco-Chr7:28021845 1.80E-26 dispersed
Cco01g0790 Cco-Chr1:8334919 Cco06g1956 Cco-Chr6:29739814 7.50E-49 transposed
Cco05g2872 Cco-Chr5:36333758 Cco06g1956 Cco-Chr6:29739814 2.00E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49