Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1958 ATGATCATGTCCCCAAACGAGATAGCAAACGATTCGATTAAGCACGCTCTCAGGGCGCTTCGGCAACGCCATCTGCTTGAAGAAGGTGCGCATGCTCCTGCTTTTCTCGCTCTATCTCGCCCCATCATAACCCAGAGTTCGGAATGGAAAGAGAAAGCGGAGAAGCTGGAGTTGGAGCTTCAGCAGTGTTATAAGGCTCAATCACGATTGTCTGAGCAACTTGTGGTTGAAGTTGCTGAGGTTCGAACTTCTAAATCTTTGATTGGGGAGAAAGATGCGTTAATTGATAATTTGGAGCAGGAATTAAGTCGAACCAGGGAAGAATGCTCGCAGCTGAAGGCAGACTTAGAGACTAAAATTAAAGCTCTGGAACTGGCTATATCTGAGAATCAAGAAATTAAAACACAGCTTGAAGCAATGACAGTTAAAGCTAAGAATGCAGAGGCTGAAAATAAGATGTTGGTTGACCGGTGGATGCTTCAAAAGATGCAGGACGCAGAACGACTCAATGAGGCAAATGCACTCTATGAAGATATGATTGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAAGTTGATGGCGTGGTTCGCCAAAGCGAAGAGGGTGCTGAATTCTTTGTGGAATCCACTGTACCCTCAGTGTGCAAGCATAGGATCCGTGGCCATGAAGGGGGGTGTGGTACTATATTGTTTGAACATAACTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGTACAGTCAAATTGTGGGATACAAATACTGGATCATTAAGTTCCACTCTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAATTACCCACGATAATAGATCTGTCATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACATCAGTTCTGGAAGGGTGCGCCATACGTTGACTGGTCACTCAGACAAAGTATGTGCCGTAGATGTAAGCAAAATTTCTAGCCGCTATGTTGTGAGTGCTGCATATGATCGCACCATTAAAATTTGGGATCTACAGAAGGGTTACTGCACCAAGACCTTCATTTTTGCCAGCAATTGCAATGCAGTTTGTTTCAGCATGGATGGACAGACCATTTGTTCTGGCCATGTGGATGGAAATCTTCGGTTGTGGGATATTCAAACAGGAAAATTGATTAGTGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTGCTTTGTCGCGTAATGGCAATACAATATTGACTAGTGGGAGAGATAACTTGCATAATTTATTTGATATTCGATCTTTGGAAGTCTGTGGGACATTACGGGCGTCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGTCCAGACGACAACTATGTTGCTGCTGGTTCCGCGGATGGGTCAGTCCATGTGTGGTCAATATCAAAACATGATATTGTGAGCACTCTGAAAGAGCACGCTGCATCTGTCCTGTGTTGTTCATGGAGTGGGCTTGGAAAACCCCTTGCATCTGCGGACAGAAATGGAATAATATTTACATGGAACTGA 1536 44.73 MIMSPNEIANDSIKHALRALRQRHLLEEGAHAPAFLALSRPIITQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEVRTSKSLIGEKDALIDNLEQELSRTREECSQLKADLETKIKALELAISENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEFFVESTVPSVCKHRIRGHEGGCGTILFEHNSGKLISGGQDRTVKLWDTNTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDISSGRVRHTLTGHSDKVCAVDVSKISSRYVVSAAYDRTIKIWDLQKGYCTKTFIFASNCNAVCFSMDGQTICSGHVDGNLRLWDIQTGKLISEVAGHSLAVTSLALSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSVHVWSISKHDIVSTLKEHAASVLCCSWSGLGKPLASADRNGIIFTWN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29755616 29758047 + CcPI632755_06g019580.1 Cco06g1958 182558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1958 511 CDD Atg16_CCD 83 173 - -
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 260 - -
Cco06g1958 511 Pfam Autophagy protein 16 (ATG16) 45 170 IPR013923 -
Cco06g1958 511 ProSitePatterns Trp-Asp (WD) repeats signature. 242 256 IPR019775 -
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 344 - -
Cco06g1958 511 SUPERFAMILY WD40 repeat-like 215 511 IPR036322 GO:0005515(InterPro)
Cco06g1958 511 Coils Coil 46 73 - -
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 426 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 511 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 511 - -
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 478 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 300 340 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 426 469 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 343 381 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 384 423 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 472 511 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 216 255 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 SMART WD40_4 258 297 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 Gene3D - 83 353 IPR015943 GO:0005515(InterPro)
Cco06g1958 511 FunFam Autophagy-related protein 16 207 511 - -
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 349 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 PANTHER AUTOPHAGY PROTEIN 16-LIKE 4 510 IPR045160 GO:0000045(PANTHER)|GO:0000045(InterPro)|GO:0000421(PANTHER)
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Cco06g1958 511 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Cco06g1958 511 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Cco06g1958 511 Coils Coil 166 186 - -
Cco06g1958 511 Gene3D - 354 511 IPR015943 GO:0005515(InterPro)
Cco06g1958 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 390 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 CDD WD40 219 511 - -
Cco06g1958 511 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Cco06g1958 511 Coils Coil 88 157 - -
Cco06g1958 511 Pfam WD domain, G-beta repeat 302 340 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 Pfam WD domain, G-beta repeat 476 511 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 Pfam WD domain, G-beta repeat 448 469 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 Pfam WD domain, G-beta repeat 218 255 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 Pfam WD domain, G-beta repeat 346 381 IPR001680 GO:0005515(InterPro)
Cco06g1958 511 Pfam WD domain, G-beta repeat 385 418 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1958 K17890 - - csv:101219308 959.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1929 Cco-Chr9:32965050 Cco06g1958 Cco-Chr6:29755616 3.80E-07 transposed
Cco06g1958 Cco-Chr6:29755616 Cco09g2166 Cco-Chr9:36057565 9.30E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32