Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1966 GTAAAGAAAGGTGGGATGCCGCCTGGGCCTCGTGCAGGGTTCTCCATGTGTGTTCATAAGAGGCGAGCCTTGCTATTTGGGGGAGTGGTAGACATGGAAGTTGAAGGTGGCGATGCAATGATGAGTCTATTCTTGAATGAACTCTATGCATTTCAAATAGACAACCATAGATGGTATCCTCTAGAGTTAAGAAAGGAGAAGTCGACAAAGGCAAAGATTAAAAAAATTTCTGAGCAAAAGAACAATGAGGTTGCTTTTGATGATAATATAAATGAGGAGGTTGTTGACGTTGGTAAAATTGAAAATCCAGTCATGGAAGAAGCGTGCAACATGGAAACTGACATTGATGAAATATCTCATCATATATCTTCATCTGTGTCCATTAACAACGGTGGATTGGAAATGAGTTCTGGCAACAAACAACAAGAATCTGGTTCAAACAAAAATGCTGTTTTGCCAGAGGTGATTAAGCCCTGTGGACGTATTAACTCCTGCATGGTTGTTGGAAGAGATACACTGTACATCTATGGGGGTATGATGGAGATTAAAGATCGAGAAATCACCCTTGATGACTTGTATGCTCTCAATCTCAGTAAACTTGATGAATGGAAGTGCATTATACCGGCCACGGAATCTGAATGGGTAGAAGCCTCGGAGGAGGAAGATGAGGAAGATGATGAAGATGACAGTGAGAATGATGACAATTCTGGAGGAAGCAATGGAAGTGATGAGGATGATAGTGATGAGGAGGATTTTGAGGCTGGAAATGATGGATCACGAAAAGTAGGAGATGCTGTAGCTTTAATTAAGGGTGAGGGCAGGAATCTCCGTAGGAAAGAGAAGCGGGCGAGGATCGAACAAATCAGAGCTAACCTTGGGCTTTCAGATTCACAAAGAACTCCCATGCCTGGAGAATCTCTAAGGGAGTTCTATAAACGGACAAATCTATATTGGCAAATGGCGGCACATGAGCATACACAACATACTGGAAAGGAACTTCGCAAGGACGGATTCGATCTTGCTGAATCTCGTTACAGGGAGCTTAAACCTATCCTTGATGAGCTTGCCATATTGGAGGCAGAGCAGAAAGCAGAAGAAGCAGAAGCTCCTGAAACTAGTTCAAGAAAAAGAGGCAAGAAGAAAAATAAAATTCGAATCTCCAAAACCCCAATCGGGTCACAGCGGCTCGTAGCCGGGTTCCGCAACTCGCAAATTACCAGAGCAATGAAGAAGAAAGCAACAGCAGGAACCATAATTCTTCTTTCACTTTTACTTTCTCTACAAGATGTTGTTCATCTTGCTTTCGCTCTATCTCCTTTAGACAGCAATCAGGACGTGGAGCAATCTGCAACTTCAAGACCTCTTGAGCAAGACAAAGAGCATGTTGATGAAGTTCATTGTTCCAGAGAAAGAAGTAGGACAGCCTGGAATATCATTGAGGAGCATTTGCTGCCGTTTATGGAGAAAGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAAACAACGATCTCTTCAGAGATCAGGAACAGCACAAGATTTATCTTGATATGAATCATTGGCAGTGTGGATACTGTCGTAAAAGCTTTCGTGCTGAAAAATTTCTTGATAAGCATTTTGACAACAGACATAACAATCTTCTGAATGTTAGCTACGGGAAGTGCTTGGCTGATTTATGTGGGGCATTACATTGTGACCTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAATCCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGAGTCTTGCTGATAGCTGTTTTCCAATTAATGAGGGACCATCAGCAAACCGTCTTCATGAGTTGTTTCTTCACCAATTCTGTGGAGCTCATTCTTGCACTGGGAAACACAAGCCATTTTCTAGAGGAGCGGCGAGGCAACCCGGCATCTTCTACATGGCATCTTCAATACTGATTTTGATGCTGCTGCCAATTTTCTATGTCATTGTCTACTTACACCGCAGAGAATCGAGAAATGGAATCGAAGTGCTTAGACGAATCTCAAAAGCTGGACGATTGCATGACTTTTCATCCACGGTTGTCTCATCGAGCTTGCTGGTTTACTCATACTTTGCCGCAACTCCCATGAAGAGCAATCCTTTCTATGCCGAAAGTAACAGAAATGTGAATTGGAACACAAGATTTGGTATCAGGAATGACCAACCAAAGCAGATTGGAAATTAA 2217 42.31 VKKGGMPPGPRAGFSMCVHKRRALLFGGVVDMEVEGGDAMMSLFLNELYAFQIDNHRWYPLELRKEKSTKAKIKKISEQKNNEVAFDDNINEEVVDVGKIENPVMEEACNMETDIDEISHHISSSVSINNGGLEMSSGNKQQESGSNKNAVLPEVIKPCGRINSCMVVGRDTLYIYGGMMEIKDREITLDDLYALNLSKLDEWKCIIPATESEWVEASEEEDEEDDEDDSENDDNSGGSNGSDEDDSDEEDFEAGNDGSRKVGDAVALIKGEGRNLRRKEKRARIEQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQHTGKELRKDGFDLAESRYRELKPILDELAILEAEQKAEEAEAPETSSRKRGKKKNKIRISKTPIGSQRLVAGFRNSQITRAMKKKATAGTIILLSLLLSLQDVVHLAFALSPLDSNQDVEQSATSRPLEQDKEHVDEVHCSRERSRTAWNIIEEHLLPFMEKENYQVSTKCRLHPNNDLFRDQEQHKIYLDMNHWQCGYCRKSFRAEKFLDKHFDNRHNNLLNVSYGKCLADLCGALHCDLKMDIKSRKSKCNPAAAARNKHLCESLADSCFPINEGPSANRLHELFLHQFCGAHSCTGKHKPFSRGAARQPGIFYMASSILILMLLPIFYVIVYLHRRESRNGIEVLRRISKAGRLHDFSSTVVSSSLLVYSYFAATPMKSNPFYAESNRNVNWNTRFGIRNDQPKQIGN 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29785685 29799615 - CcPI632755_06g019660.1 Cco06g1966 182566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1966 738 Pfam Kelch motif 158 198 - -
Cco06g1966 738 PANTHER ZINC FINGER PROTEIN-RELATED 409 683 - GO:0000976(PANTHER)
Cco06g1966 738 ProSitePatterns Zinc finger C2H2 type domain signature. 524 545 IPR013087 -
Cco06g1966 738 MobiDBLite consensus disorder prediction 211 265 - -
Cco06g1966 738 MobiDBLite consensus disorder prediction 447 466 - -
Cco06g1966 738 MobiDBLite consensus disorder prediction 214 253 - -
Cco06g1966 738 Gene3D - 2 89 IPR015915 GO:0005515(InterPro)
Cco06g1966 738 SUPERFAMILY Kelch motif 5 205 IPR015915 GO:0005515(InterPro)
Cco06g1966 738 Pfam Domain of unknown function (DUF4110) 293 377 IPR025183 -
Cco06g1966 738 MobiDBLite consensus disorder prediction 452 466 - -
Cco06g1966 738 MobiDBLite consensus disorder prediction 363 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1509 Cco-Chr5:18558860 Cco06g1966 Cco-Chr6:29785685 3.90E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1966 - - - 0.0