Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1972 ATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAACAGGTCCGACTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCGTCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTGTCTGAGGTTTCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGCAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTACTTTACTGTCATAAAGCATCCTATGGATCTGGGTACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCCGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTCACAAGTGAAGAACAATGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAGAAAAGACAAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATATGATGGAAAAGCAGAAATGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATAACGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGGAATTTTGTGTTCTGAAACAAATGTGGATCGGAAGCAAAATGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAGATGGGATTGATCTAGTTGAGCAAACCACCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAACTGCGAATGGAAAGGGAAGAACTCGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCATCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGTTTGTACATGAAAATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2343 43.28 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQCQVPSATFVPKETESTLPVPPSEKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKCTKAEPCVVELHNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKGILCSETNVDRKQNELGDLEIGNYEEDGIDLVEQTTQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKLRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29866858 29872528 - CcPI632755_06g019720.1 Cco06g1972 182572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1972 780 Coils Coil 106 126 - -
Cco06g1972 780 MobiDBLite consensus disorder prediction 562 588 - -
Cco06g1972 780 SUPERFAMILY Bromodomain 184 309 IPR036427 GO:0005515(InterPro)
Cco06g1972 780 Pfam Bromodomain extra-terminal - transcription regulation 359 420 IPR027353 -
Cco06g1972 780 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
Cco06g1972 780 MobiDBLite consensus disorder prediction 722 741 - -
Cco06g1972 780 MobiDBLite consensus disorder prediction 443 525 - -
Cco06g1972 780 PRINTS Bromodomain signature 269 288 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 PRINTS Bromodomain signature 235 251 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 PRINTS Bromodomain signature 219 232 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 PRINTS Bromodomain signature 251 269 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 MobiDBLite consensus disorder prediction 142 193 - -
Cco06g1972 780 Gene3D - 186 320 IPR036427 GO:0005515(InterPro)
Cco06g1972 780 SMART bromo_6 197 307 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 MobiDBLite consensus disorder prediction 491 524 - -
Cco06g1972 780 Coils Coil 632 680 - -
Cco06g1972 780 ProSiteProfiles Bromodomain profile. 216 288 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 MobiDBLite consensus disorder prediction 708 780 - -
Cco06g1972 780 MobiDBLite consensus disorder prediction 619 679 - -
Cco06g1972 780 Pfam Bromodomain 208 292 IPR001487 GO:0005515(InterPro)
Cco06g1972 780 PANTHER TRANSCRIPTION FACTOR GTE8 82 759 IPR052442 -
Cco06g1972 780 FunFam Transcription factor GTE4 180 315 - -
Cco06g1972 780 MobiDBLite consensus disorder prediction 559 594 - -
Cco06g1972 780 CDD Bromo_plant1 205 302 IPR037377 -
Cco06g1972 780 Gene3D - 354 430 IPR038336 -
Cco06g1972 780 MobiDBLite consensus disorder prediction 327 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2197 Cco-Chr4:35615492 Cco06g1972 Cco-Chr6:29866858 4.50E-38 dispersed
Cco05g1521 Cco-Chr5:18789438 Cco06g1972 Cco-Chr6:29866858 1.10E-156 dispersed
Cco06g1972 Cco-Chr6:29866858 Cco10g0953 Cco-Chr10:20735619 5.70E-47 dispersed
Cco06g1972 Cco-Chr6:29866858 Cco07g1071 Cco-Chr7:24243399 2.60E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47